Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

35580774 .. 35581131

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGGCGGCATCAGCAGCTGACCCCTCCGACGAAGTCAAGCACATCGAGAAGCTCTACGAGTTCGGCGAGCGACTCAATGAGTCCAAGGACATATCCCAGAATGTCGAGGACTATCAGTGCGGCAAAGACGAGCATGAAGGCCAAGCAGCTCGCTGCACAGCTTATTCCCCGGGCTTTCCTTGCCGGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0009555 GO:0010941 GO:0032501 GO:0032502 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

API5

Protein Analysis

63

Amino Acids

7.04

Weight (kDa)

4.66

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 120
AluBI	AGCT	4 cut(s)	17, 52, 149, 161
AluI	AGCT	4 cut(s)	17, 52, 149, 161
AlwNI	CAGNNNCTG	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	3 cut(s)	14, 146, 153
AsuC2I	CCSGG	2 cut(s)	170, 171
AvaI	CYCGRG	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	26, 140, 158
BcnI	CCSGG	2 cut(s)	170, 171
BfmI	CTRYAG	1 cut(s)	188
BisI	GCNGC	5 cut(s)	6, 15, 121, 147, 154
BlsI	GCNGC	5 cut(s)	7, 16, 122, 148, 155
Bme1390I	CCNGG	2 cut(s)	170, 171
BmeT110I	CYCGRG	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	170, 171
BmsI	GCATC	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	170, 171
BsaJI	CCNNGG	3 cut(s)	84, 168, 169
Bse118I	RCCGGY	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	84, 168, 169
BseXI	GCAGC	3 cut(s)	26, 140, 158
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	170, 184
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	169
BspACI	CCGC	2 cut(s)	5, 120
BspANI	GGCC	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	3 cut(s)	84, 168, 169
BssT1I	CCWWGG	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	68, 151, 185
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 14, 180
BstSCI	CCNGG	2 cut(s)	168, 169
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	26, 140, 158
BsuRI	GGCC	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	122
Cac8I	GCNNGC	3 cut(s)	68, 151, 185
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	183
Cfr9I	CCCGGG	1 cut(s)	169
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	7 cut(s)	17, 52, 141, 149, 161, 174, 187
CviKI_1	RGCY	7 cut(s)	17, 52, 141, 149, 161, 174, 187
Eco130I	CCWWGG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	92, 135, 190
FatI	CATG	1 cut(s)	133
Fnu4HI	GCNGC	5 cut(s)	6, 15, 121, 147, 154
Fsp4HI	GCNGC	5 cut(s)	6, 15, 121, 147, 154
GluI	GCNGC	5 cut(s)	6, 15, 121, 147, 154
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	170, 184
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	2 cut(s)	72, 80
HpaII	CCGG	2 cut(s)	170, 184
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 14, 180
Hsp92II	CATG	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	183
KroNI	GCCGGC	1 cut(s)	185
LpnPI	CCDG	2 cut(s)	110, 183
Lsp1109I	GCAGC	3 cut(s)	26, 140, 158
LweI	GCATC	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	66, 89
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	34, 100
MroNI	GCCGGC	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	170, 184
MspR9I	CCNGG	2 cut(s)	170, 171
MwoI	GCNNNNNNNGC	3 cut(s)	11, 14, 180
NaeI	GCCGGC	1 cut(s)	185
NciI	CCSGG	2 cut(s)	170, 171
NgoMIV	GCCGGC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	7, 16, 122, 148, 155
PleI	GAGTC	2 cut(s)	66, 88
PpsI	GAGTC	2 cut(s)	66, 88
PstNI	CAGNNNCTG	1 cut(s)	17
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	17
SatI	GCNGC	5 cut(s)	6, 15, 121, 147, 154
SchI	GAGTC	2 cut(s)	66, 89
ScrFI	CCNGG	2 cut(s)	170, 171
SetI	ASST	4 cut(s)	19, 54, 151, 163
SfaNI	GCATC	1 cut(s)	17
SfcI	CTRYAG	1 cut(s)	188
SmaI	CCCGGG	1 cut(s)	171
SsiI	CCGC	2 cut(s)	5, 120
StyD4I	CCNGG	2 cut(s)	168, 169
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	2 cut(s)	45, 105
TauI	GCSGC	2 cut(s)	8, 123
TscAI	CASTG	1 cut(s)	122
TseI	GCWGC	3 cut(s)	14, 146, 153
TspDTI	ATGAA	1 cut(s)	150
TspMI	CCCGGG	1 cut(s)	169
TspRI	CASTG	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	32
XmaI	CCCGGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.