Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

36902025 .. 36904939

Gene Structure 2915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAGGCCGCTCCGCTGTGATCCCCGCCGCCACGAAACATACCCACCGCAGAACGTGCCGCCTCTACCTCCCTCACACCGAAGCCACCTCAATCCAGTACCCCGCCAACCCAGGCCACTGCAGATCTTGAGTCTCAAATCCCTGCAACCGTCGTCCGTCGAAGAAGCCCAAAACCGAGTACCACCAAAACCACAGACGCAAAGCCACCAGAACCCGAGATGCAAACCAGAGACCGAAATTGGAACCCACCTGCAAAAAACTTTCGAGCAACCCCCGCCCAGAGTTCGATCGTATAGTGCAATCCCCGTCCGGCAGAGGCGTTGGCGAGGCCCAAAGGCCAGCCTAGAGCCACCACCGGACGAAGAAAGTGATCGTGCAAAAAGCCGCCGGCTGTGCTTAGGGTTTTTGTCAGAACTATTCTTTTTGCCTACTAATCCGATAGAAGGATCTCGATATTCCGGTTCAACCGACATTCTTGCTCCTGGAATGGAATCTCGGATAGTTAGTGCAGATACCCTCAAGGCTCTTCCACCTAATCAATTGGGAGAAATATGGGTTAGAGGGCCAAATATAATGCAAGTTGACCGTATATACATAAACAAGGTTGGGTACACGTACGCTGGGGATCTTGGATATTTTGATGAAGAGGGGAGATTGTATGTTGTGGATCGACTCAAAGAGCTCATCAAGTGTTATGGTTATCAGGTTACTCCAACAGAACTTGAAGGGTTGTTACTTACTCACCCTGAAATATTGGATGCAGTTGTAATCCCATATCCGGATGCTAAAGCCGGTGAGGTTCCAACTGCTTATGTTGTTCGTGAACCCAATAGCTTGCTAACTGAACAAGACATTCTAAAATTTGTGGAGAAGCTAGTAAAGCAAGGCTCAAAGCGCTCTTCCTTCCTTGCTTTCTTAGTTGCACCGTTCAAAAGACTGTGGAGCATAACTTTTGTAACCAGTGTTCCTAAGTCGGCTTCCGGAAAGATTTTGAGAAGGGAGCTTATCCAGAAAGTCCGGTCAAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

343

Amino Acids

38.93

Weight (kDa)

9.59

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	148 - 193	2e-06	AMP-binding enzyme
AMP-binding_C	PF13193	240 - 329	5.6e-11	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	258
Acc36I	ACCTGC	1 cut(s)	258
AccBSI	CCGCTC	1 cut(s)	10
AccIII	TCCGGA	2 cut(s)	778, 980
AciI	CCGC	9 cut(s)	8, 13, 25, 28, 47, 59, 103, 275, 385
AclWI	GGATC	4 cut(s)	14, 454, 633, 675
AcsI	RAATTY	1 cut(s)	860
AfaI	GTAC	4 cut(s)	99, 180, 611, 617
AfeI	AGCGCT	1 cut(s)	896
AfiI	CCNNNNNNNGG	2 cut(s)	443, 778
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	3 cut(s)	465, 725, 931
AjnI	CCWGG	2 cut(s)	110, 481
AluBI	AGCT	4 cut(s)	682, 834, 874, 1003
AluI	AGCT	4 cut(s)	682, 834, 874, 1003
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	137, 224
AlwI	GGATC	4 cut(s)	14, 454, 633, 675
Ama87I	CYCGRG	1 cut(s)	214
Aor13HI	TCCGGA	2 cut(s)	778, 980
Aor51HI	AGCGCT	1 cut(s)	896
AoxI	GGCC	5 cut(s)	5, 113, 328, 336, 563
ApoI	RAATTY	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	897
AspS9I	GGNCC	2 cut(s)	329, 563
AsuHPI	GGTGA	2 cut(s)	734, 806
AvaI	CYCGRG	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	684
BarI	GAAGNNNNNNTAC	2 cut(s)	717, 749
Bbv12I	GWGCWC	1 cut(s)	684
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciT130I	CCWGG	2 cut(s)	112, 483
BcoDI	GTCTC	2 cut(s)	137, 224
BfaI	CTAG	2 cut(s)	344, 875
BfmI	CTRYAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	898
BfuAI	ACCTGC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	4 cut(s)	8, 28, 59, 385
BlsI	GCNGC	4 cut(s)	9, 29, 60, 386
Bme1390I	CCNGG	2 cut(s)	112, 483
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	329, 563
BmiI	GGNNCC	2 cut(s)	244, 801
BmrFI	CCNGG	2 cut(s)	112, 483
BmsI	GCATC	3 cut(s)	209, 748, 772
Bpu10I	CCTNAGC	1 cut(s)	397
BpuEI	CTTGAG	2 cut(s)	148, 503
BsaAI	YACGTR	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	5 cut(s)	355, 458, 778, 980, 1017
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 778
Bse118I	RCCGGY	2 cut(s)	387, 791
Bse1I	ACTGG	2 cut(s)	95, 960
BseAI	TCCGGA	2 cut(s)	778, 980
BseBI	CCWGG	2 cut(s)	112, 483
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	763, 787
BseLI	CCNNNNNNNGG	2 cut(s)	443, 778
BseNI	ACTGG	2 cut(s)	95, 960
BseYI	CCCAGC	1 cut(s)	620
BsgI	GTGCAG	1 cut(s)	528
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	5 cut(s)	7, 115, 330, 338, 565
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	8 cut(s)	310, 356, 388, 459, 779, 792, 981, 1018
BsiWI	CGTACG	1 cut(s)	615
BslI	CCNNNNNNNGG	2 cut(s)	443, 778
BsmAI	GTCTC	2 cut(s)	137, 224
BsnI	GGCC	5 cut(s)	7, 115, 330, 338, 565
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp13I	TCCGGA	2 cut(s)	778, 980
Bsp143I	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
BspACI	CCGC	9 cut(s)	8, 13, 25, 28, 47, 59, 103, 275, 385
BspANI	GGCC	5 cut(s)	7, 115, 330, 338, 565
BspEI	TCCGGA	2 cut(s)	778, 980
BspLI	GGNNCC	2 cut(s)	244, 801
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	258
BspPI	GGATC	4 cut(s)	14, 454, 633, 675
BspQI	GCTCTTC	2 cut(s)	531, 904
BspTNI	GGTCTC	1 cut(s)	224
BsrBI	CCGCTC	1 cut(s)	10
BsrFI	RCCGGY	2 cut(s)	387, 791
BsrI	ACTGG	2 cut(s)	95, 960
BssAI	RCCGGY	2 cut(s)	387, 791
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
Bst2UI	CCWGG	2 cut(s)	112, 483
Bst4CI	ACNGT	4 cut(s)	150, 587, 927, 939
Bst6I	CTCTTC	3 cut(s)	531, 639, 904
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	615
BstC8I	GCNNGC	3 cut(s)	340, 389, 836
BstDEI	CTNAG	3 cut(s)	397, 916, 969
BstF5I	GGATG	2 cut(s)	763, 787
BstH2I	RGCGCY	1 cut(s)	898
BstHHI	GCGC	1 cut(s)	897
BstKTI	GATC	7 cut(s)	22, 126, 290, 373, 449, 628, 670
BstMAI	GTCTC	2 cut(s)	137, 224
BstMBI	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 274, 393, 880, 894
BstNI	CCWGG	2 cut(s)	112, 483
BstSCI	CCNGG	2 cut(s)	110, 481
BstSFI	CTRYAG	1 cut(s)	119
BstX2I	RGATCY	3 cut(s)	123, 446, 625
BstYI	RGATCY	3 cut(s)	123, 446, 625
BsuRI	GGCC	5 cut(s)	7, 115, 330, 338, 565
BtsCI	GGATG	2 cut(s)	763, 787
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	2 cut(s)	116, 967
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	3 cut(s)	340, 389, 836
CfoI	GCGC	1 cut(s)	897
Cfr10I	RCCGGY	2 cut(s)	387, 791
Cfr13I	GGNCC	2 cut(s)	329, 563
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	98, 179, 610, 616
CviQI	GTAC	4 cut(s)	98, 179, 610, 616
DdeI	CTNAG	3 cut(s)	397, 916, 969
DpnI	GATC	7 cut(s)	21, 125, 289, 372, 448, 627, 669
DpnII	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
Eam1104I	CTCTTC	3 cut(s)	531, 639, 904
EarI	CTCTTC	3 cut(s)	531, 639, 904
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	224
Eco47III	AGCGCT	1 cut(s)	896
Eco53kI	GAGCTC	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	110, 481
EcoT38I	GRGCYC	1 cut(s)	684
FauI	CCCGC	3 cut(s)	32, 110, 282
FauNDI	CATATG	1 cut(s)	1028
Fnu4HI	GCNGC	4 cut(s)	8, 28, 59, 385
FokI	GGATG	2 cut(s)	770, 794
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	8, 28, 59, 385
FspBI	CTAG	2 cut(s)	344, 875
GlaI	GCGC	1 cut(s)	896
GluI	GCNGC	4 cut(s)	8, 28, 59, 385
GsaI	CCCAGC	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	898
HaeIII	GGCC	5 cut(s)	7, 115, 330, 338, 565
HapII	CCGG	8 cut(s)	310, 356, 388, 459, 779, 792, 981, 1018
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	897
Hin6I	GCGC	1 cut(s)	895
HinP1I	GCGC	1 cut(s)	895
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	3 cut(s)	130, 491, 672
HpaII	CCGG	8 cut(s)	310, 356, 388, 459, 779, 792, 981, 1018
HphI	GGTGA	2 cut(s)	734, 806
Hpy166II	GTNNAC	3 cut(s)	583, 612, 824
Hpy188I	TCNGA	3 cut(s)	412, 438, 498
Hpy188III	TCNNGA	6 cut(s)	127, 450, 779, 821, 981, 1009
Hpy8I	GTNNAC	3 cut(s)	583, 612, 824
Hpy99I	CGWCG	2 cut(s)	154, 161
HpyAV	CCTTC	4 cut(s)	437, 719, 913, 990
HpyCH4III	ACNGT	4 cut(s)	150, 587, 927, 939
HpyCH4IV	ACGT	2 cut(s)	54, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 274, 393, 880, 894
HpyF3I	CTNAG	3 cut(s)	397, 916, 969
HpySE526I	ACGT	2 cut(s)	54, 614
HspAI	GCGC	1 cut(s)	895
Kpn2I	TCCGGA	2 cut(s)	778, 980
KroI	GCCGGC	1 cut(s)	387
KroNI	GCCGGC	1 cut(s)	389
Kzo9I	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
LguI	GCTCTTC	2 cut(s)	531, 904
LmnI	GCTCC	4 cut(s)	15, 484, 942, 1000
LweI	GCATC	3 cut(s)	209, 748, 772
MaeI	CTAG	2 cut(s)	344, 875
MaeII	ACGT	2 cut(s)	54, 614
MaeIII	GTNAC	3 cut(s)	706, 732, 955
MalI	GATC	7 cut(s)	21, 125, 289, 372, 448, 627, 669
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
MboII	GAAGA	5 cut(s)	173, 374, 518, 656, 891
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	3 cut(s)	123, 446, 625
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	3 cut(s)	237, 539, 860
MlyI	GAGTC	2 cut(s)	139, 666
MmeI	TCCRAC	2 cut(s)	737, 827
MroI	TCCGGA	2 cut(s)	778, 980
MroNI	GCCGGC	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	8 cut(s)	310, 356, 388, 459, 779, 792, 981, 1018
MspR9I	CCNGG	2 cut(s)	112, 483
MunI	CAATTG	1 cut(s)	539
MvaI	CCWGG	2 cut(s)	112, 483
MwoI	GCNNNNNNNGC	5 cut(s)	55, 274, 393, 880, 894
NaeI	GCCGGC	1 cut(s)	389
NdeI	CATATG	1 cut(s)	1028
NdeII	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
NgoMIV	GCCGGC	1 cut(s)	387
NlaIV	GGNNCC	2 cut(s)	244, 801
PaqCI	CACCTGC	1 cut(s)	258
PciSI	GCTCTTC	2 cut(s)	531, 904
PdiI	GCCGGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	491
Pfl23II	CGTACG	1 cut(s)	615
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	9, 29, 60, 386
Ple19I	CGATCG	1 cut(s)	290
PleI	GAGTC	2 cut(s)	138, 666
PpsI	GAGTC	2 cut(s)	138, 666
Ppu21I	YACGTR	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	110, 481
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	2 cut(s)	110, 481
PspLI	CGTACG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	244, 801
PspPI	GGNCC	2 cut(s)	329, 563
PsrI	GAACNNNNNNTAC	2 cut(s)	948, 980
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	3 cut(s)	123, 446, 625
PvuI	CGATCG	1 cut(s)	290
RsaI	GTAC	4 cut(s)	99, 180, 611, 617
RsaNI	GTAC	4 cut(s)	98, 179, 610, 616
SacI	GAGCTC	1 cut(s)	684
SapI	GCTCTTC	2 cut(s)	531, 904
SatI	GCNGC	4 cut(s)	8, 28, 59, 385
Sau3AI	GATC	7 cut(s)	19, 123, 287, 370, 446, 625, 667
Sau96I	GGNCC	2 cut(s)	329, 563
SchI	GAGTC	2 cut(s)	139, 666
ScrFI	CCNGG	2 cut(s)	112, 483
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	3 cut(s)	209, 748, 772
SfcI	CTRYAG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	127, 518
SmoI	CTYRAG	2 cut(s)	127, 518
Sse9I	AATT	3 cut(s)	237, 539, 860
SsiI	CCGC	9 cut(s)	8, 13, 25, 28, 47, 59, 103, 275, 385
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	2 cut(s)	344, 875
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	2 cut(s)	110, 481
TaaI	ACNGT	4 cut(s)	150, 587, 927, 939
TaiI	ACGT	2 cut(s)	57, 617
TaqI	TCGA	5 cut(s)	159, 264, 286, 451, 670
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	3 cut(s)	237, 539, 860
TauI	GCSGC	4 cut(s)	10, 30, 61, 387
TfiI	GAWTC	1 cut(s)	491
TscAI	CASTG	2 cut(s)	123, 967
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	123, 967
XapI	RAATTY	1 cut(s)	860
XspI	CTAG	2 cut(s)	344, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.