Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

36941455 .. 36943525

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGTCCTTTTCTTCCTTTTAAAACATTGGTAGTGCCTACAGTTGAAGCAGATGTGGCATTTGGTCTTGGTAAGTTCAACTTGACAAGTGATGAAGTCAAATCTAGAGTGTCAAAAGCTGCAAATGCTGTTAGCATGTCGAAGTACCTACAGGTCAGTCCAGACTCTGGTGGCCAGAAGCAAAGGGTTGCCATTGCTGGTGCTTCAGCTGAAGCATGCAAAGTTTTGTTATTGGATGAGCTGACAACATTTTTGGATGAAAGAGATCAGGTTGGGGTGATTAAAGCTGTGAGGAGATCCTTGGATAGTTCTGGGGAAGTTACAGCGTTATGGGTCACTCATCGCCTGGAAGAACTTGAGTATGCAGATGGTGCTGTTTATATGGAAAATGGGAGAGCTGTGATGCATGGCGATGCAGCAAGCATTACGGATTTAATTAAAACCAAGCAAACAGCATATATCAAGGAAATCAATTCTGGACTGGTAGTGAGAGAGTACTTTTCTGTGTATAACTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

173

Amino Acids

18.88

Weight (kDa)

5.64

Isoelectric Point (pI)

37.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	32 - 82	1.8e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	189, 231
AfaI	GTAC	2 cut(s)	146, 497
AfiI	CCNNNNNNNGG	1 cut(s)	167
AgsI	TTSAA	2 cut(s)	47, 79
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	119, 209, 241, 287, 398
AluI	AGCT	5 cut(s)	119, 209, 241, 287, 398
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	119, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	106, 428
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	347
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	39, 149
BisI	GCNGC	2 cut(s)	120, 417
BlsI	GCNGC	2 cut(s)	121, 418
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	393, 403
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	241, 262
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	106, 428
BshFI	GGCC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	265, 296
BspANI	GGCC	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	265, 296
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	217, 421
BstF5I	GGATG	2 cut(s)	241, 262
BstKTI	GATC	2 cut(s)	268, 299
BstMBI	GATC	2 cut(s)	265, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 125, 371
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	2 cut(s)	139, 219
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	2 cut(s)	39, 149
BstV1I	GCAGC	2 cut(s)	106, 428
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	2 cut(s)	326, 426
BtsCI	GGATG	2 cut(s)	241, 262
Cac8I	GCNNGC	2 cut(s)	217, 421
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	145, 496
CviAII	CATG	3 cut(s)	136, 216, 407
CviJI	RGCY	6 cut(s)	119, 174, 209, 241, 287, 398
CviKI_1	RGCY	6 cut(s)	119, 174, 209, 241, 287, 398
CviQI	GTAC	2 cut(s)	145, 496
DpnI	GATC	2 cut(s)	267, 298
DpnII	GATC	2 cut(s)	265, 296
DraI	TTTAAA	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	2 cut(s)	189, 231
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	139, 219, 410
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	3 cut(s)	135, 215, 406
Fnu4HI	GCNGC	2 cut(s)	120, 417
FokI	GGATG	2 cut(s)	248, 269
Fsp4HI	GCNGC	2 cut(s)	120, 417
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	120, 417
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	139, 219, 410
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	105, 161, 477
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	5 cut(s)	122, 219, 365, 406, 416
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 125, 371
Hsp92II	CATG	3 cut(s)	139, 219, 410
Kzo9I	GATC	2 cut(s)	265, 296
Lsp1109I	GCAGC	2 cut(s)	106, 428
LweI	GCATC	2 cut(s)	393, 403
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	319, 334
MalI	GATC	2 cut(s)	267, 298
MboI	GATC	2 cut(s)	265, 296
MboII	GAAGA	2 cut(s)	5, 362
MflI	RGATCY	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	435, 472
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	4 cut(s)	21, 282, 434, 438
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	56, 125, 371
NdeII	GATC	2 cut(s)	265, 296
NlaIII	CATG	3 cut(s)	139, 219, 410
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	2 cut(s)	139, 219
PacI	TTAATTAA	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	219
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	121, 418
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	146, 497
RsaNI	GTAC	2 cut(s)	145, 496
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	21, 282, 434, 438
SatI	GCNGC	2 cut(s)	120, 417
Sau3AI	GATC	2 cut(s)	265, 296
Sau96I	GGNCC	1 cut(s)	5
ScaI	AGTACT	1 cut(s)	497
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	8 cut(s)	121, 150, 156, 211, 243, 273, 289, 400
SfaNI	GCATC	2 cut(s)	393, 403
SfcI	CTRYAG	2 cut(s)	39, 149
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	2 cut(s)	435, 472
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	435, 472
TatI	WGTACW	1 cut(s)	495
Tru1I	TTAA	4 cut(s)	21, 282, 434, 438
Tru9I	TTAA	4 cut(s)	21, 282, 434, 438
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	119, 416
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	108, 273
TspGWI	ACGGA	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	5
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	2 cut(s)	139, 219
XspI	CTAG	1 cut(s)	105
ZrmI	AGTACT	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.