Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

36999201 .. 36999545

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGTCCCAGTGGGGCCGGAAAGTCGACGTTCTTGGATGGAGTTGCTGGGAGAATAGCGGGTGGAAGTCTTAAAGGGAGAGTGTCCTTGGATGGGAAGGAAATGAGTCCTAGCATAATTAAGAGGACTTCAGCTTATATTATGCAGGATGATAGGCTCTTCCCAACCCTTACAGTCTATGAGACTTTGATGTTCGCTGCTGATTTTATGTTGGGGCCGGTCACAACTACTGAGAAGAAACAGCGTGTTGAAAAGTTGATTCAACAGCTCGGCTTATCCGTAAGTGATCTATTCCGGCTAATGCTTTATTGTAAGGTATCTAATATATTATGTTACTTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022804 GO:0022857 GO:0030198 GO:0031224 GO:0032501 GO:0032502 GO:0032989 GO:0042623 GO:0042626 GO:0043062 GO:0043492 GO:0044085 GO:0044425 GO:0044464 GO:0045229 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

114

Amino Acids

12.5

Weight (kDa)

9.23

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	1 - 93	2.2e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	251, 263
AluBI	AGCT	2 cut(s)	134, 268
AluI	AGCT	2 cut(s)	134, 268
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	2 cut(s)	15, 215
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	5, 15, 215
AvaII	GGWCC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	32, 86
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	3 cut(s)	5, 15, 215
BmiI	GGNNCC	4 cut(s)	6, 7, 16, 216
BmrI	ACTGGG	1 cut(s)	3
BmuI	ACTGGG	1 cut(s)	3
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	3 cut(s)	43, 97, 154
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	2 cut(s)	17, 217
BsiSI	CCGG	3 cut(s)	18, 218, 295
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	17, 217
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	17, 217
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	6, 7, 16, 216
BspQI	GCTCTTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	9
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	43, 97, 154
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	17, 217
BtsCI	GGATG	3 cut(s)	43, 97, 154
BtsIMutI	CAGTG	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	5, 15, 215
CviJI	RGCY	7 cut(s)	17, 134, 157, 217, 268, 273, 298
CviKI_1	RGCY	7 cut(s)	17, 134, 157, 217, 268, 273, 298
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaiI	YATR	8 cut(s)	116, 138, 143, 180, 209, 326, 331, 343
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	3 cut(s)	50, 104, 161
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	17, 217
HapII	CCGG	3 cut(s)	18, 218, 295
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	106, 259
HpaII	CCGG	3 cut(s)	18, 218, 295
Hpy166II	GTNNAC	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	29
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	164
LpnPI	CCDG	6 cut(s)	22, 31, 33, 131, 231, 308
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	220, 332
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	151, 247
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	117
MseI	TTAA	2 cut(s)	72, 120
MspI	CCGG	3 cut(s)	18, 218, 295
NdeII	GATC	1 cut(s)	286
NlaIV	GGNNCC	4 cut(s)	6, 7, 16, 216
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	4 cut(s)	6, 7, 16, 216
PspPI	GGNCC	3 cut(s)	5, 15, 215
PspPPI	RGGWCCY	1 cut(s)	5
SalI	GTCGAC	1 cut(s)	25
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	72, 120
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	3 cut(s)	5, 15, 215
SchI	GAGTC	1 cut(s)	115
SetI	ASST	4 cut(s)	32, 136, 270, 318
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	72, 120
Tru9I	TTAA	2 cut(s)	72, 120
TscAI	CASTG	1 cut(s)	16
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.