RchiOBHm_Chr7g0219311

Signal recognition particle 19 kDa

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
37655818 .. 37656036
219 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGACAAAGATCTTCCAAGTATAAAGAAATGGATTGTGCTTTATCCATTTTATATCAGCTCTAAGAAAACTATGGTTGAAGGGAGGAGAATAGCTCGTGAGAATCCTACTTGTGCTAAGATTGGTGATTGCTGCAGCCATTTCAAAGTTCTATTTGCAATTGACTTTTGTTTGTATTACGTTCCCACCATTTTTTTATTTATGCTTTATGCGTATTGA

Protein Analysis

72

Amino Acids

8.51

Weight (kDa)

8.96

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP19 PF01922 13 - 53 4.5e-06 SRP19 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 80, 145
AluBI AGCT 2 cut(s) 60, 95
AluI AGCT 2 cut(s) 60, 95
ApeKI GCWGC 2 cut(s) 132, 135
AsuHPI GGTGA 1 cut(s) 137
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 2 cut(s) 119, 147
BfmI CTRYAG 1 cut(s) 133
BglII AGATCT 1 cut(s) 10
BisI GCNGC 2 cut(s) 133, 136
BlsI GCNGC 2 cut(s) 134, 137
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 119, 147
Bsp143I GATC 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 137
BssMI GATC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 63, 117
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 119, 147
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
CviJI RGCY 3 cut(s) 60, 95, 138
CviKI_1 RGCY 3 cut(s) 60, 95, 138
DdeI CTNAG 2 cut(s) 63, 117
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
FaiI YATR 5 cut(s) 23, 54, 74, 203, 210
Fnu4HI GCNGC 2 cut(s) 133, 136
Fsp4HI GCNGC 2 cut(s) 133, 136
GluI GCNGC 2 cut(s) 133, 136
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 135, 158
HpyF3I CTNAG 2 cut(s) 63, 117
HpySE526I ACGT 1 cut(s) 180
Kzo9I GATC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 119, 147
MaeII ACGT 1 cut(s) 180
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 5
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 10
MluCI AATT 1 cut(s) 159
MnlI CCTC 1 cut(s) 78
MunI CAATTG 1 cut(s) 159
NdeII GATC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 134, 137
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 10
SatI GCNGC 2 cut(s) 133, 136
Sau3AI GATC 1 cut(s) 10
SetI ASST 3 cut(s) 62, 97, 183
SfcI CTRYAG 1 cut(s) 133
SgeI CNNG 4 cut(s) 30, 108, 110, 123
Sse9I AATT 1 cut(s) 159
TaiI ACGT 1 cut(s) 183
TasI AATT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 103
TseI GCWGC 2 cut(s) 132, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.