Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

38594728 .. 38597386

Gene Structure 2659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGTTGCCTGAGGTCATTTTCTGTGAGTGGAGGAATGGGTGCTGCATCATTGTCAAAACCCGATCTTATTCATGATGATACTGTGGAATTAGCAAGACGAATTGAAAAAACTGGGGTTTCCGCTCTTGCTGTTCATGGAAGAAATGATGATCACATGAATTTCTGGTCAATAAACTACAGAAGAGTTGCAGATAAGCTGCGGGATCCAGCAAAGTGGAGTGAGATTGCTGATATTGTAGCATCATTATCCATTCCAGTCATAGCAAACGGTGCCTCATCAATAATGGCTGCAAGAGGAGCACTTTGGAATGCTTCAATTTTCAGTCCAAAGGGCAAACTACCATGGGAAGACGTGAAAAAGGAATACAGCATCTTATGGGATAATGACATTAAAAGCACAAAGCACACACTGAAGGAAATGATAATGTATTATTCATCCCTTGAACTACCGGAGGGAAAGGCTGTGATTAAATCAGAATCCTTGGAAGATCTAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0002943 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004857 GO:0004860 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006469 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010467 GO:0010563 GO:0010605 GO:0010941 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0034470 GO:0034641 GO:0034660 GO:0042325 GO:0042326 GO:0043086 GO:0043170 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0055114 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus

Protein Analysis

166

Amino Acids

18.32

Weight (kDa)

6.42

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	25 - 92	1.9e-10	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	2 cut(s)	123, 202
AclWI	GGATC	2 cut(s)	200, 213
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	107, 318, 446
AjiI	CACGTC	1 cut(s)	355
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	200, 213
ApeKI	GCWGC	3 cut(s)	44, 199, 290
ApoI	RAATTY	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	31, 186, 277
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	3 cut(s)	45, 200, 291
BlsI	GCNGC	3 cut(s)	46, 201, 292
BmgBI	CACGTC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	207, 274
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	56, 251, 381
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	344, 483
BsaWI	WCCGGW	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	118, 257
Bse21I	CCTNAGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	344, 483
BseGI	GGATG	1 cut(s)	437
BseNI	ACTGG	2 cut(s)	118, 257
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	3 cut(s)	31, 186, 277
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	64, 151, 205, 490
Bsp19I	CCATGG	1 cut(s)	344
BspACI	CCGC	2 cut(s)	123, 202
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	207, 274
BspPI	GGATC	2 cut(s)	200, 213
BspT107I	GGYRCC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	118, 257
BssECI	CCNNGG	2 cut(s)	344, 483
BssMI	GATC	4 cut(s)	64, 151, 205, 490
BssT1I	CCWWGG	2 cut(s)	344, 483
Bst4CI	ACNGT	2 cut(s)	85, 272
Bst6I	CTCTTC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	4 cut(s)	67, 154, 208, 493
BstMBI	GATC	4 cut(s)	64, 151, 205, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 299
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	31, 186, 277
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	2 cut(s)	205, 490
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	2 cut(s)	205, 490
Bsu36I	CCTNAGG	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	410
CciI	TCATGA	1 cut(s)	73
CviAII	CATG	4 cut(s)	74, 137, 157, 345
CviJI	RGCY	3 cut(s)	199, 290, 464
CviKI_1	RGCY	3 cut(s)	199, 290, 464
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	4 cut(s)	66, 153, 207, 492
DpnII	GATC	4 cut(s)	64, 151, 205, 490
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	344, 483
Eco57I	CTGAAG	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	11
EcoT14I	CCWWGG	2 cut(s)	344, 483
ErhI	CCWWGG	2 cut(s)	344, 483
FaeI	CATG	4 cut(s)	77, 140, 160, 348
FaiI	YATR	6 cut(s)	75, 138, 158, 263, 346, 379
FatI	CATG	4 cut(s)	73, 136, 156, 344
FauI	CCCGC	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	45, 200, 291
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	3 cut(s)	45, 200, 291
FspBI	CTAG	1 cut(s)	494
GluI	GCNGC	3 cut(s)	45, 200, 291
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	4 cut(s)	77, 140, 160, 348
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	409
HpyCH4III	ACNGT	2 cut(s)	85, 272
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	47, 191, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 299
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	77, 140, 160, 348
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	64, 151, 205, 490
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	23, 99, 151, 222, 270, 465
Lsp1109I	GCAGC	3 cut(s)	31, 186, 277
LweI	GCATC	3 cut(s)	56, 251, 381
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	354
MalI	GATC	4 cut(s)	66, 153, 207, 492
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	64, 151, 205, 490
MboII	GAAGA	4 cut(s)	153, 195, 362, 500
MflI	RGATCY	2 cut(s)	205, 490
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	4 cut(s)	89, 102, 160, 318
MnlI	CCTC	5 cut(s)	6, 26, 286, 290, 448
MseI	TTAA	2 cut(s)	393, 471
MspI	CCGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	272, 299
NcoI	CCATGG	1 cut(s)	344
NdeII	GATC	4 cut(s)	64, 151, 205, 490
NlaIII	CATG	4 cut(s)	77, 140, 160, 348
NlaIV	GGNNCC	2 cut(s)	207, 274
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	46, 201, 292
PspN4I	GGNNCC	2 cut(s)	207, 274
PsuI	RGATCY	2 cut(s)	205, 490
SaqAI	TTAA	2 cut(s)	393, 471
SatI	GCNGC	3 cut(s)	45, 200, 291
Sau3AI	GATC	4 cut(s)	64, 151, 205, 490
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	3 cut(s)	17, 201, 357
SfaNI	GCATC	3 cut(s)	56, 251, 381
SfcI	CTRYAG	1 cut(s)	178
Sse9I	AATT	4 cut(s)	89, 102, 160, 318
SsiI	CCGC	2 cut(s)	123, 202
SspMI	CTAG	1 cut(s)	494
StyI	CCWWGG	2 cut(s)	344, 483
TaaI	ACNGT	2 cut(s)	85, 272
TaiI	ACGT	1 cut(s)	357
TasI	AATT	4 cut(s)	89, 102, 160, 318
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	393, 471
Tru9I	TTAA	2 cut(s)	393, 471
TscAI	CASTG	1 cut(s)	417
TseI	GCWGC	3 cut(s)	44, 199, 290
TspDTI	ATGAA	4 cut(s)	62, 125, 173, 426
TspRI	CASTG	1 cut(s)	417
XapI	RAATTY	1 cut(s)	160
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.