RchiOBHm_Chr7g0220191

Peptidogalycan biosysnthesis/recognition

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
39000327 .. 39000892
566 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGGCAGTAGCAATGAGCTACTGCTGCAGCAAGCCTTCCCCATTTCTGGGTCGATACCCAACTCGTTTTCATTTGGGGAAATCAAAACCTGGACAAGTTGCTGTTCAGGCGCCTAGAATTAGTGCATTATTTTGGGGAGCTAAAAAGTCCCCGGAGCCAAAAGAAATAGAGACCAATCTTTCACTTGGGGAATTCACTTTGATAGGCCCAGAGGGAGGAATCTCAGAGGGGAAGCCTAGTAAGATATCGGTTTCAGTCATTTCTTCAATCTCTGAGGTCTCATCCACTGACTGGGATGCGTGCAGTTTGGATTGTAAGATCAAATATGGACATAACACATATCATCATAAAGTAATTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FemAB_like

Protein Analysis

121

Amino Acids

13.13

Weight (kDa)

8.35

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 291
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 110
AfiI CCNNNNNNNGG 4 cut(s) 46, 47, 215, 291
AgsI TTSAA 1 cut(s) 267
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 2 cut(s) 18, 140
AluI AGCT 2 cut(s) 18, 140
Alw26I GTCTC 2 cut(s) 164, 283
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 24, 27
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 1 cut(s) 152
BanI GGYRCC 1 cut(s) 109
BbvI GCAGC 2 cut(s) 11, 39
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 164, 283
BfaI CTAG 2 cut(s) 114, 237
BfmI CTRYAG 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 2 cut(s) 25, 28
BlsI GCNGC 2 cut(s) 26, 29
Bme1390I CCNGG 2 cut(s) 90, 152
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 111, 156
BmrFI CCNGG 2 cut(s) 90, 152
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 286
BmuI ACTGGG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 2 cut(s) 164, 283
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 47, 215, 291
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 281, 301
BseLI CCNNNNNNNGG 4 cut(s) 46, 47, 215, 291
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 237, 264
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 11, 39
BsgI GTGCAG 1 cut(s) 322
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 109
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 4 cut(s) 46, 47, 215, 291
BsmAI GTCTC 2 cut(s) 164, 283
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 2 cut(s) 164, 283
Bsp143I GATC 1 cut(s) 318
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 236, 265
BspLI GGNNCC 2 cut(s) 111, 156
BspMAI CTGCAG 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 164, 283
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 318
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 32, 301
BstDEI CTNAG 2 cut(s) 223, 273
BstF5I GGATG 2 cut(s) 281, 301
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 2 cut(s) 164, 283
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 24, 107
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 2 cut(s) 88, 150
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 11, 39
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 281, 301
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 32, 301
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 206
CviJI RGCY 6 cut(s) 18, 34, 140, 157, 207, 235
CviKI_1 RGCY 6 cut(s) 18, 34, 140, 157, 207, 235
DdeI CTNAG 2 cut(s) 223, 273
DinI GGCGCC 1 cut(s) 111
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eco31I GGTCTC 2 cut(s) 164, 283
Eco32I GATATC 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
FaiI YATR 4 cut(s) 327, 333, 340, 348
FaqI GGGAC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 25, 28
FokI GGATG 2 cut(s) 268, 308
Fsp4HI GCNGC 2 cut(s) 25, 28
FspBI CTAG 2 cut(s) 114, 237
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 25, 28
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 110
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 1 cut(s) 219
HpaII CCGG 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 226, 274
HpyAV CCTTC 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 27, 125, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 107
HpyF3I CTNAG 2 cut(s) 223, 273
Hsp92I GRCGYC 1 cut(s) 110
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 2 cut(s) 137, 154
LpnPI CCDG 7 cut(s) 32, 75, 92, 102, 165, 222, 277
Lsp1109I GCAGC 2 cut(s) 11, 39
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 114, 237
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 255
MluCI AATT 3 cut(s) 117, 191, 354
Mly113I GGCGCC 1 cut(s) 110
MnlI CCTC 4 cut(s) 205, 209, 220, 268
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 90, 152
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 24, 107
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 1 cut(s) 152
NdeII GATC 1 cut(s) 318
NlaIV GGNNCC 2 cut(s) 111, 156
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 2 cut(s) 26, 29
PluTI GGCGCC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 111, 156
PspPI GGNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 29
SatI GCNGC 2 cut(s) 25, 28
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 90, 152
SetI ASST 4 cut(s) 20, 91, 142, 279
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 25
SfoI GGCGCC 1 cut(s) 111
Sse9I AATT 3 cut(s) 117, 191, 354
SspDI GGCGCC 1 cut(s) 109
SspMI CTAG 2 cut(s) 114, 237
StyD4I CCNGG 2 cut(s) 88, 150
TaqI TCGA 1 cut(s) 52
TasI AATT 3 cut(s) 117, 191, 354
TfiI GAWTC 1 cut(s) 219
TscAI CASTG 1 cut(s) 292
TseI GCWGC 2 cut(s) 24, 27
TspDTI ATGAA 1 cut(s) 59
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 291
XapI RAATTY 1 cut(s) 191
XspI CTAG 2 cut(s) 114, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.