RchiOBHm_Chr7g0220341

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
39220471 .. 39221633
1163 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGGCGGTGGCTGATATGGAATACAGGGCAGAGATAAAGGCAAAGAAGAAGGCATATGTTGCGTTGAAGAAAATTGCACGTCAACAAGGAAAGAGGCCTCCTCCCAACCCATATCCCAATGTTGTCAAGGAGATACAAGCTGAGGAGAAGAAGTATGTCTATGACCGTTTTTACAATCCAAGAATTCGCCAGATTTTAAGGAAACTGCAAGAGGAAAAGGCAGTTGAGGATCAGGACAGAATGAGAGGGGGTTGGGGTGGCGGTGGCGGTGGTGTTGGTGGTGGTGGTTGGGGAAGCAGTGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCATGGGTGGCGGTGGTGGTTGGGGAAGCAGTGGCAGTGCTGGAGCTGGCATGGGTGGCAGTGGTTGGAGAAGCAGTGGCGGTGGCAGTGGCAGTGGTGGTTGGGGTGGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

14.99

Weight (kDa)

10.08

Isoelectric Point (pI)

63.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 183
AgsI TTSAA 1 cut(s) 67
AjiI CACGTC 1 cut(s) 80
AluBI AGCT 2 cut(s) 140, 377
AluI AGCT 2 cut(s) 140, 377
AlwI GGATC 1 cut(s) 237
AoxI GGCC 2 cut(s) 95, 439
ApoI RAATTY 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 141
BisI GCNGC 8 cut(s) 310, 313, 316, 319, 322, 325, 328, 331
BlsI GCNGC 8 cut(s) 311, 314, 317, 320, 323, 326, 329, 332
BmgBI CACGTC 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 141
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 391, 421
Bse118I RCCGGY 1 cut(s) 441
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 90, 158
BshFI GGCC 2 cut(s) 97, 441
BsiSI CCGG 1 cut(s) 442
BsnI GGCC 2 cut(s) 97, 441
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 2 cut(s) 97, 441
BspCNI CTCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 441
BssAI RCCGGY 1 cut(s) 441
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 141
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 97, 441
BtrI CACGTC 1 cut(s) 80
BtsI GCAGTG 7 cut(s) 304, 367, 373, 397, 412, 424, 430
BtsIMutI CAGTG 7 cut(s) 304, 367, 373, 397, 412, 424, 430
Cac8I GCNNGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 441
CviAII CATG 2 cut(s) 334, 382
CviJI RGCY 5 cut(s) 11, 97, 140, 377, 441
CviKI_1 RGCY 5 cut(s) 11, 97, 140, 377, 441
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 183
FaeI CATG 2 cut(s) 337, 385
FaiI YATR 8 cut(s) 17, 55, 57, 112, 156, 162, 335, 383
FatI CATG 2 cut(s) 333, 381
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 8 cut(s) 310, 313, 316, 319, 322, 325, 328, 331
Fsp4HI GCNGC 8 cut(s) 310, 313, 316, 319, 322, 325, 328, 331
GluI GCNGC 8 cut(s) 310, 313, 316, 319, 322, 325, 328, 331
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 2 cut(s) 97, 441
HapII CCGG 1 cut(s) 442
Hin1II CATG 2 cut(s) 337, 385
HincII GTYRAC 1 cut(s) 83
HindII GTYRAC 1 cut(s) 83
HpaII CCGG 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 77, 208
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 2 cut(s) 337, 385
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 5 cut(s) 10, 203, 218, 357, 363
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 3 cut(s) 58, 79, 160
MluCI AATT 2 cut(s) 72, 183
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 7 cut(s) 87, 108, 111, 136, 205, 220, 239
MseI TTAA 1 cut(s) 197
MspI CCGG 1 cut(s) 442
NdeI CATATG 1 cut(s) 55
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 337, 385
PceI AGGCCT 1 cut(s) 97
PkrI GCNGC 8 cut(s) 311, 314, 317, 320, 323, 326, 329, 332
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 8 cut(s) 310, 313, 316, 319, 322, 325, 328, 331
Sau3AI GATC 1 cut(s) 229
SetI ASST 3 cut(s) 82, 142, 379
Sse9I AATT 2 cut(s) 72, 183
SseBI AGGCCT 1 cut(s) 97
StuI AGGCCT 1 cut(s) 97
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 82
TasI AATT 2 cut(s) 72, 183
TauI GCSGC 8 cut(s) 312, 315, 318, 321, 324, 327, 330, 333
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 7 cut(s) 304, 367, 373, 397, 412, 424, 430
TspRI CASTG 7 cut(s) 304, 367, 373, 397, 412, 424, 430
XapI RAATTY 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.