Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

42263890 .. 42265415

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 147 bp

ATGGGGTGGCAGAGAGGCATTGCTTTGTTTATTGCTTTTCAGGTGATTATTGGGTGTTTATCGGAGTCTGAGTCGGAGATTAACAGAGGCAGCTTTCCAAAGGGCTTTGTTTTTGGGACTGCTTCTTCTGCCTTCCAGATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0008422 GO:0009507 GO:0009536 GO:0015925 GO:0015926 GO:0016787 GO:0016798 GO:0033907 GO:0042973 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0071704 GO:0080079 GO:0080083 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

48

Amino Acids

5.23

Weight (kDa)

5.11

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bse3DI	GCAATG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	102
CviJI	RGCY	2 cut(s)	93, 105
CviKI_1	RGCY	2 cut(s)	93, 105
DdeI	CTNAG	1 cut(s)	69
FaqI	GGGAC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	65, 71
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	64, 70, 76
Hpy188III	TCNNGA	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	69
LpnPI	CCDG	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	102
MboII	GAAGA	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	74, 80
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	8, 80
MseI	TTAA	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	73, 79
PpsI	GAGTC	2 cut(s)	73, 79
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	91
SchI	GAGTC	2 cut(s)	74, 80
SetI	ASST	2 cut(s)	45, 95
SgeI	CNNG	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseI	GCWGC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.