RchiOBHm_Chr7g0221641

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
42692754 .. 42693620
867 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 195 bp
ATGGACTATGCAGATAGTGATAGTGATGAACATAGCAATCATGAGAGTTCAGTGGATTGGTTTATCACTTTTCAGGCAGTCATTAATGCATTTAAGTTTATGTCAAGAGTGGCTGGGAGAGAAATAGTTGTAAGAGATGCCAAGAGGTTTCATCATTTTAGGAACGTCGAATGCTCTTGTGGAAATTACTGGTAG

Protein Analysis

64

Amino Acids

7.56

Weight (kDa)

5.67

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 29 - 64 1.8e-14 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AseI ATTAAT 1 cut(s) 84
BmsI GCATC 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 194
BseNI ACTGG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 176
BspHI TCATGA 1 cut(s) 40
BsrI ACTGG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 57
CciI TCATGA 1 cut(s) 40
CviAII CATG 1 cut(s) 41
CviJI RGCY 1 cut(s) 113
CviKI_1 RGCY 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 91
FaeI CATG 1 cut(s) 44
FaiI YATR 4 cut(s) 9, 33, 42, 101
FatI CATG 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 41, 105
Hpy99I CGWCG 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 11, 89
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 44
LpnPI CCDG 3 cut(s) 59, 99, 175
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 165
MluCI AATT 1 cut(s) 184
MnlI CCTC 1 cut(s) 138
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 2 cut(s) 84, 93
Mva1269I GAATGC 1 cut(s) 176
NlaIII CATG 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 91
PagI TCATGA 1 cut(s) 40
PctI GAATGC 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 84, 93
SetI ASST 2 cut(s) 149, 168
SfaNI GCATC 1 cut(s) 127
SgeI CNNG 6 cut(s) 53, 86, 117, 126, 154, 189
Sse9I AATT 1 cut(s) 184
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 184
Tru1I TTAA 2 cut(s) 84, 93
Tru9I TTAA 2 cut(s) 84, 93
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 42, 140
TspRI CASTG 1 cut(s) 57
VspI ATTAAT 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.