RchiOBHm_Chr7g0222391

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
43725864 .. 43726176
313 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 162 bp
ATGATAATTGATTCACAGGGTTCTGCACCTTGTTCTCCCACTGTTCAAGGTTCTAATGAGGATACTGGGTCTGGGGGTAATGGTCAAGCATTTGACCGACAACTGTCAAAAGTTGGTTCTTTTAATTTCCAGACCTCTTTCAGTTACAAGTCAGAACACTAG

Protein Analysis

53

Amino Acids

5.59

Weight (kDa)

4.83

Isoelectric Point (pI)

25.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 47
BciVI GTATCC 1 cut(s) 55
BfaI CTAG 1 cut(s) 160
BfuI GTATCC 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 9
BsrI ACTGG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 43, 105
BstPAI GACNNNNGTC 1 cut(s) 103
BsuI GTATCC 1 cut(s) 55
BtsIMutI CAGTG 1 cut(s) 39
FspBI CTAG 1 cut(s) 160
HinfI GANTC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 43, 105
HpyCH4V TGCA 1 cut(s) 26
LpnPI CCDG 4 cut(s) 2, 51, 57, 143
MaeI CTAG 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 143
MluCI AATT 2 cut(s) 6, 124
MnlI CCTC 2 cut(s) 52, 145
MseI TTAA 1 cut(s) 123
PfeI GAWTC 1 cut(s) 11
PshAI GACNNNNGTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 123
SetI ASST 3 cut(s) 31, 52, 137
SgeI CNNG 7 cut(s) 29, 42, 59, 78, 84, 98, 142
Sse9I AATT 2 cut(s) 6, 124
SspMI CTAG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 43, 105
TaqII GACCGA 1 cut(s) 111
TasI AATT 2 cut(s) 6, 124
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 46
TspRI CASTG 1 cut(s) 46
XspI CTAG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.