RchiOBHm_Chr7g0223021

exocyst complex component

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
44644048 .. 44644362
315 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 186 bp
ATGTGTGACGCACGCGAAGCAAAAAAACAGCAAAAAGACTTATTTGCCCTAAATTTGTTTTTTTGTTTTGTTTTTTTTTTGCTTTTTTTTTTGCTGAAGAGAATCATCTCCGAAGTTGAACAAGTTTCCTCTGTTGCCATGGCCGACCTGAAACCTATAGCCGAATGCATAATCTCCTCCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

61

Amino Acids

6.96

Weight (kDa)

6.1

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 119
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 180
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 143
Bsp19I CCATGG 1 cut(s) 138
BspANI GGCC 1 cut(s) 143
BspFNI CGCG 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 15
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 13
CseI GACGC 1 cut(s) 17
CviAII CATG 1 cut(s) 139
CviJI RGCY 2 cut(s) 143, 161
CviKI_1 RGCY 2 cut(s) 143, 161
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 142
FaiI YATR 3 cut(s) 140, 158, 170
FatI CATG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 142
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 142
LpnPI CCDG 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 109
MluCI AATT 1 cut(s) 52
MnlI CCTC 1 cut(s) 139
Mph1103I ATGCAT 1 cut(s) 170
MspI CCGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 170
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 138
NlaIII CATG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 170
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 102
SetI ASST 2 cut(s) 150, 157
SfcI CTRYAG 1 cut(s) 156
SgeI CNNG 5 cut(s) 24, 26, 134, 151, 160
Sse9I AATT 1 cut(s) 52
StyI CCWWGG 1 cut(s) 138
TasI AATT 1 cut(s) 52
TfiI GAWTC 1 cut(s) 102
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
XapI RAATTY 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.