RchiOBHm_Chr7g0223201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
44868094 .. 44870863
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 387 bp
ATGGGGACGAGAGAGGTGTATGAACAGAAGCTAAGGAGTGGGAATCTGCATCATGATCCTACCCTGAAACCAGGCCTCAGGCCCTCGGCACCCCTTGCTGCCCCCGCTGGCAAGGGTGAATGGACTGTCACTCCTGTTCTTCATGATGCCACTGCTGTTGCTGGCTTAGGTATTGGTGGAATGCTTAGTGCAATTCATGGCTGCAATACAGGGATCCCGTTCCTTCAGAATCGCTTAAAAGGACCAAAGTCTCTTCCTTTCTTAGGTGGGCTTGCTCCGCTGCTACTCTTTTCAGGTGCCAGTGCTGCATTTGGAGCCAAATTGTTGCCGTTTAGCAACCATGCACTGATTAGCTACTACAATCAAGAAGAGATTCTTGGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.4

Weight (kDa)

9.25

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 88, 296
AciI CCGC 2 cut(s) 105, 278
AclWI GGATC 3 cut(s) 50, 208, 221
AcoI YGGCCR 1 cut(s) 379
AcuI CTGAAG 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 263
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 1 cut(s) 360
AluBI AGCT 2 cut(s) 31, 354
AluI AGCT 2 cut(s) 31, 354
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 3 cut(s) 50, 208, 221
AoxI GGCC 3 cut(s) 73, 80, 379
ApeKI GCWGC 4 cut(s) 98, 201, 280, 305
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 81, 242
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 381
BamHI GGATCC 1 cut(s) 213
BanI GGYRCC 2 cut(s) 88, 296
BbvI GCAGC 4 cut(s) 85, 188, 267, 292
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 255
BisI GCNGC 4 cut(s) 99, 202, 281, 306
BlsI GCNGC 4 cut(s) 100, 203, 282, 307
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 81, 242
BmiI GGNNCC 4 cut(s) 90, 215, 298, 316
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 58, 136
BoxI GACNNNNGTC 1 cut(s) 247
Bpu10I CCTNAGC 2 cut(s) 32, 166
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 300
Bse21I CCTNAGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 4 cut(s) 85, 188, 267, 292
BshFI GGCC 3 cut(s) 75, 82, 381
BshNI GGYRCC 2 cut(s) 88, 296
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 19
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 3 cut(s) 75, 82, 381
Bsp143I GATC 2 cut(s) 55, 213
BspACI CCGC 2 cut(s) 105, 278
BspANI GGCC 3 cut(s) 75, 82, 381
BspCNI CTCAG 1 cut(s) 90
BspHI TCATGA 2 cut(s) 52, 142
BspLI GGNNCC 4 cut(s) 90, 215, 298, 316
BspPI GGATC 3 cut(s) 50, 208, 221
BspT107I GGYRCC 2 cut(s) 88, 296
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 55, 213
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 2 cut(s) 258, 363
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 109, 163, 273
BstDEI CTNAG 5 cut(s) 32, 77, 166, 185, 262
BstENI CCTNNNNNAGG 1 cut(s) 261
BstKTI GATC 2 cut(s) 58, 216
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 55, 213
BstMWI GCNNNNNNNGC 5 cut(s) 95, 104, 277, 305, 314
BstNI CCWGG 1 cut(s) 72
BstPAI GACNNNNGTC 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 4 cut(s) 85, 188, 267, 292
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 3 cut(s) 75, 82, 381
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 150, 307, 344
Cac8I GCNNGC 3 cut(s) 109, 163, 273
CciI TCATGA 2 cut(s) 52, 142
Cfr13I GGNCC 2 cut(s) 81, 242
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 4 cut(s) 53, 143, 197, 341
CviJI RGCY 9 cut(s) 31, 75, 82, 165, 201, 271, 317, 354, 381
CviKI_1 RGCY 9 cut(s) 31, 75, 82, 165, 201, 271, 317, 354, 381
DdeI CTNAG 5 cut(s) 32, 77, 166, 185, 262
DpnI GATC 2 cut(s) 57, 215
DpnII GATC 2 cut(s) 55, 213
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 258, 363
EarI CTCTTC 2 cut(s) 258, 363
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 70
FaeI CATG 4 cut(s) 56, 146, 200, 344
FaiI YATR 5 cut(s) 21, 54, 144, 198, 342
FalI AAGNNNNNCTT 1 cut(s) 360
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 52, 142, 196, 340
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 4 cut(s) 99, 202, 281, 306
Fsp4HI GCNGC 4 cut(s) 99, 202, 281, 306
GluI GCNGC 4 cut(s) 99, 202, 281, 306
HaeIII GGCC 3 cut(s) 75, 82, 381
Hin1II CATG 4 cut(s) 56, 146, 200, 344
HinfI GANTC 3 cut(s) 43, 229, 373
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 3 cut(s) 53, 143, 365
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 49, 191, 204, 308, 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 104, 277, 305, 314
HpyF3I CTNAG 5 cut(s) 32, 77, 166, 185, 262
Hsp92II CATG 4 cut(s) 56, 146, 200, 344
Kzo9I GATC 2 cut(s) 55, 213
LmnI GCTCC 2 cut(s) 280, 314
Lsp1109I GCAGC 4 cut(s) 85, 188, 267, 292
LweI GCATC 2 cut(s) 58, 136
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 57, 215
MboI GATC 2 cut(s) 55, 213
MboII GAAGA 3 cut(s) 131, 245, 380
MflI RGATCY 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 2 cut(s) 192, 320
MluNI TGGCCA 1 cut(s) 381
MnlI CCTC 3 cut(s) 7, 86, 94
Mox20I TGGCCA 1 cut(s) 381
MroXI GAANNNNTTC 1 cut(s) 372
MscI TGGCCA 1 cut(s) 381
MseI TTAA 1 cut(s) 236
Msp20I TGGCCA 1 cut(s) 381
MspA1I CMGCKG 2 cut(s) 107, 280
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 95, 104, 277, 305, 314
NdeII GATC 2 cut(s) 55, 213
NlaIII CATG 4 cut(s) 56, 146, 200, 344
NlaIV GGNNCC 4 cut(s) 90, 215, 298, 316
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 127
PagI TCATGA 2 cut(s) 52, 142
PceI AGGCCT 1 cut(s) 75
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 3 cut(s) 43, 229, 373
PkrI GCNGC 4 cut(s) 100, 203, 282, 307
PshAI GACNNNNGTC 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 4 cut(s) 90, 215, 298, 316
PspPI GGNCC 2 cut(s) 81, 242
PsuI RGATCY 1 cut(s) 213
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 4 cut(s) 99, 202, 281, 306
Sau3AI GATC 2 cut(s) 55, 213
Sau96I GGNCC 2 cut(s) 81, 242
ScrFI CCNGG 1 cut(s) 72
SetI ASST 6 cut(s) 18, 33, 172, 268, 298, 356
SfaNI GCATC 2 cut(s) 58, 136
SinI GGWCC 1 cut(s) 242
Sse9I AATT 2 cut(s) 192, 320
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 2 cut(s) 105, 278
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 127
TasI AATT 2 cut(s) 192, 320
TfiI GAWTC 3 cut(s) 43, 229, 373
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TscAI CASTG 3 cut(s) 157, 307, 351
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 4 cut(s) 98, 201, 280, 305
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 36, 131, 185
TspRI CASTG 3 cut(s) 157, 307, 351
VpaK11BI GGWCC 1 cut(s) 242
XagI CCTNNNNNAGG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.