RchiOBHm_Chr7g0223461

Calcineurin B-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
45216133 .. 45217499
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
ATGATTGATCTGCAGCACTTGATTGAGTTTCTTCAACAGAATTATTGTCGTCATACTCACCGACATCTTCATAATTTTCTTCTAAAATTGGTACTTGAAGCATTGGTTTTCTTTTTCCAAAAGTCATTAATTGATGCGCTGAGCCAATGGGATCGCTGGAGTTACCGATTTGGATCGCGATCGTACCGCGTTGCGGGTCGGGCGATCGGGATCGCGGGTCACCGGCAAACCCAGCGATCCTGGCATCTCTGCTTCCATCCCAATGCCCCACAAGAAGACAAGATCGATTTTCCATTTAAGCTCTATGACTTGGATAACACGGGCTTTATTGAGCGCCCAGAGGTCAAGCAAATGTTAATTGCACTTCTTTGTGAATCTGAAATGAACCTGGCAAATGACAACATCGAGTTAATTCTTTATAAGACTTTCATGGAAGCTGATGTGAACCAAGATGGGAAAATAGAGTTTTCTGAGTGGAAAATTTTTGTTTCAAAGTATCCATCATTGTTAAAGATTATGACCCTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0016049 GO:0019722 GO:0019899 GO:0019900 GO:0019932 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0035556 GO:0040007 GO:0042221 GO:0042995 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0044706 GO:0046872 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071840 GO:0071944 GO:0090406 GO:0097305 GO:0097306 GO:0120025 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 EF-hand_8

Protein Analysis

176

Amino Acids

20.94

Weight (kDa)

6.7

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 96 - 158 9.8e-08 EF-hand domain pair
EF-hand_5 PF13202 140 - 162 4e-06 EF hand
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AccII CGCG 3 cut(s) 178, 189, 215
AciI CCGC 3 cut(s) 187, 194, 215
AclWI GGATC 4 cut(s) 159, 181, 218, 231
AcsI RAATTY 1 cut(s) 480
AfaI GTAC 2 cut(s) 93, 185
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 35, 98, 492
AjnI CCWGG 2 cut(s) 239, 387
AluBI AGCT 2 cut(s) 301, 437
AluI AGCT 2 cut(s) 301, 437
AlwI GGATC 4 cut(s) 159, 181, 218, 231
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 480
AseI ATTAAT 1 cut(s) 128
AspLEI GCGC 2 cut(s) 139, 336
AsuHPI GGTGA 2 cut(s) 50, 212
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 25
BccI CCATC 3 cut(s) 264, 446, 508
BciT130I CCWGG 2 cut(s) 241, 389
BciVI GTATCC 1 cut(s) 507
BfaI CTAG 1 cut(s) 529
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 507
BisI GCNGC 1 cut(s) 14
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 2 cut(s) 241, 389
BmrFI CCNGG 2 cut(s) 241, 389
BmsI GCATC 2 cut(s) 124, 253
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 178
Bpu1102I GCTNAGC 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 285
BsaBI GATNNNNATC 3 cut(s) 172, 178, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 222
Bse8I GATNNNNATC 3 cut(s) 172, 178, 209
BseBI CCWGG 2 cut(s) 241, 389
BseCI ATCGAT 1 cut(s) 285
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 3 cut(s) 172, 178, 209
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 2 cut(s) 131, 462
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 231
Bsh1236I CGCG 3 cut(s) 178, 189, 215
Bsh1285I CGRYCG 2 cut(s) 182, 207
BshVI ATCGAT 1 cut(s) 285
BsiEI CGRYCG 2 cut(s) 182, 207
BsiSI CCGG 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 193
Bsp143I GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
Bsp1720I GCTNAGC 1 cut(s) 140
Bsp68I TCGCGA 1 cut(s) 178
BspACI CCGC 3 cut(s) 187, 194, 215
BspCNI CTCAG 2 cut(s) 132, 463
BspDI ATCGAT 1 cut(s) 285
BspFNI CGCG 3 cut(s) 178, 189, 215
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 4 cut(s) 159, 181, 218, 231
BsrFI RCCGGY 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 222
BssMI GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
Bst2UI CCWGG 2 cut(s) 241, 389
BstDEI CTNAG 2 cut(s) 140, 471
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 3 cut(s) 178, 189, 215
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 2 cut(s) 139, 336
BstKTI GATC 8 cut(s) 10, 154, 176, 182, 207, 213, 239, 285
BstMBI GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
BstMCI CGRYCG 2 cut(s) 182, 207
BstMWI GCNNNNNNNGC 3 cut(s) 200, 232, 241
BstNI CCWGG 2 cut(s) 241, 389
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 239, 387
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 3 cut(s) 178, 189, 215
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 285
BsuI GTATCC 1 cut(s) 507
BsuTUI ATCGAT 1 cut(s) 285
BtsCI GGATG 1 cut(s) 256
BtuMI TCGCGA 1 cut(s) 178
CfoI GCGC 2 cut(s) 139, 336
Cfr10I RCCGGY 1 cut(s) 222
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 2 cut(s) 92, 184
CviAII CATG 1 cut(s) 430
CviJI RGCY 4 cut(s) 144, 301, 324, 437
CviKI_1 RGCY 4 cut(s) 144, 301, 324, 437
CviQI GTAC 2 cut(s) 92, 184
DdeI CTNAG 2 cut(s) 140, 471
DpnI GATC 8 cut(s) 9, 153, 175, 181, 206, 212, 238, 284
DpnII GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 239, 387
FaeI CATG 1 cut(s) 433
FaiI YATR 6 cut(s) 54, 72, 306, 420, 431, 518
FatI CATG 1 cut(s) 429
FauI CCCGC 2 cut(s) 187, 208
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 529
GlaI GCGC 2 cut(s) 138, 335
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 337
HapII CCGG 1 cut(s) 223
HhaI GCGC 2 cut(s) 139, 336
Hin1II CATG 1 cut(s) 433
Hin6I GCGC 2 cut(s) 137, 334
HinP1I GCGC 2 cut(s) 137, 334
HinfI GANTC 1 cut(s) 374
HpaII CCGG 1 cut(s) 223
HphI GGTGA 2 cut(s) 50, 212
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 379, 472
Hpy188III TCNNGA 2 cut(s) 177, 208
Hpy8I GTNNAC 1 cut(s) 445
HpyCH4V TGCA 2 cut(s) 13, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 232, 241
HpyF3I CTNAG 2 cut(s) 140, 471
Hsp92II CATG 1 cut(s) 433
HspAI GCGC 2 cut(s) 137, 334
Kzo9I GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
LpnPI CCDG 8 cut(s) 142, 226, 236, 245, 253, 351, 374, 401
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 124, 253
MaeI CTAG 1 cut(s) 529
MaeIII GTNAC 2 cut(s) 161, 218
MalI GATC 8 cut(s) 9, 153, 175, 181, 206, 212, 238, 284
MboI GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
MboII GAAGA 4 cut(s) 23, 59, 71, 287
MluCI AATT 7 cut(s) 40, 73, 86, 129, 357, 411, 480
MnlI CCTC 1 cut(s) 334
MseI TTAA 5 cut(s) 128, 297, 356, 410, 509
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 241, 389
MvaI CCWGG 2 cut(s) 241, 389
MvnI CGCG 3 cut(s) 178, 189, 215
MwoI GCNNNNNNNGC 3 cut(s) 200, 232, 241
NdeII GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
NlaIII CATG 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 218
NruI TCGCGA 1 cut(s) 178
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 15
Ple19I CGATCG 2 cut(s) 182, 207
PshBI ATTAAT 1 cut(s) 128
PsiI TTATAA 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 239, 387
PspEI GGTNACC 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 2 cut(s) 239, 387
PstI CTGCAG 1 cut(s) 15
PvuI CGATCG 2 cut(s) 182, 207
RruI TCGCGA 1 cut(s) 178
RsaI GTAC 2 cut(s) 93, 185
RsaNI GTAC 2 cut(s) 92, 184
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 5 cut(s) 128, 297, 356, 410, 509
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 8 cut(s) 7, 151, 173, 179, 204, 210, 236, 282
ScrFI CCNGG 2 cut(s) 241, 389
SetI ASST 4 cut(s) 303, 345, 390, 439
SfaNI GCATC 2 cut(s) 124, 253
SfcI CTRYAG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 7 cut(s) 40, 73, 86, 129, 357, 411, 480
SsiI CCGC 3 cut(s) 187, 194, 215
SspMI CTAG 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 239, 387
TaqI TCGA 2 cut(s) 285, 405
TasI AATT 7 cut(s) 40, 73, 86, 129, 357, 411, 480
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 5 cut(s) 128, 297, 356, 410, 509
Tru9I TTAA 5 cut(s) 128, 297, 356, 410, 509
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 59, 398, 418
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 1 cut(s) 480
XspI CTAG 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.