RchiOBHm_Chr7g0223511

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
45285804 .. 45296582
10779 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGACAAGTATTTTTGCCCTGATCAGCAAGAATATTATCTCTATTTATGAGATAAATACATTTACAGCTGTATTGACGGTAGGGAATGTCATGGACTTCAGTTGGTCACCAACTGATGCGATTCTTGCTCTCTTTGTATCAGAATCGATTGATGCTGGTGGTGCCATACCTGCTTTGGTGAAACTTGTTCAAATACCCTGTAAAGAGCCGTTGATTGAGAAGAAGCTTTCTAGTGTTAGTAAGTGCAAGATGTACTGGCAAAGCAATGGGGAGTATCTTGCTATGAAAGCTGACAGCAATACAAACAATTTCGTTGAGCTTTTCCAAATTAAAGATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

5.02

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 178
AccB1I GGYRCC 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 1 cut(s) 254
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 4 cut(s) 68, 226, 290, 319
AluI AGCT 4 cut(s) 68, 226, 290, 319
AsuHPI GGTGA 2 cut(s) 99, 190
BanI GGYRCC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 193
BclI TGATCA 1 cut(s) 21
BfaI CTAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 2 cut(s) 106, 142
Bsa29I ATCGAT 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 271
BseCI ATCGAT 1 cut(s) 146
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 146
Bsp143I GATC 1 cut(s) 21
BspDI ATCGAT 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 1 cut(s) 260
BssMI GATC 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 105
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 125, 161, 170, 287
BstPI GGTNACC 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 146
BveI ACCTGC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 146
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 68, 208, 226, 290, 319
CviKI_1 RGCY 5 cut(s) 68, 208, 226, 290, 319
CviQI GTAC 1 cut(s) 253
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 82
Eco91I GGTNACC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 105
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 48, 92, 167, 284
FatI CATG 1 cut(s) 90
FbaI TGATCA 1 cut(s) 21
FspBI CTAG 1 cut(s) 231
Hin1II CATG 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 121, 143
HphI GGTGA 2 cut(s) 99, 190
Hpy188I TCNGA 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 161, 170, 287
Hsp92II CATG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 5 cut(s) 32, 141, 183, 211, 241
LweI GCATC 2 cut(s) 106, 142
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 232
MluCI AATT 2 cut(s) 307, 327
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 125, 161, 170, 287
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 121, 143
PspEI GGTNACC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 1 cut(s) 21
SetI ASST 5 cut(s) 70, 172, 228, 292, 321
SfaNI GCATC 2 cut(s) 106, 142
Sse9I AATT 2 cut(s) 307, 327
SspI AATATT 1 cut(s) 34
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 146
TasI AATT 2 cut(s) 307, 327
TatI WGTACW 1 cut(s) 252
TfiI GAWTC 2 cut(s) 121, 143
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseFI GTSAC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 299
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.