RchiOBHm_Chr7g0223841

pentatricopeptide repeat-containing protein At1g12700, mitochondrial

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
45735183 .. 45735797
615 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGGCATTTAGCTTATCTGTCTTGGGACAAGTCTTCAACCAGGTGTCAACACCTACTAGAATCAATGGGTTTGTTCTAGACAATAGTGTAGGTAAAGCAGCAGAGATTTTCAACAAAATGCTGCATACACGGAGGTCATTGTGTGCCCGATGTGGTTACTTTCAGCATAGTTATAAAAGTACCGTGAATGAAGGGTGA

Protein Analysis

65

Amino Acids

7.23

Weight (kDa)

9.59

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 2 cut(s) 37, 112
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 98, 121
BaeGI GKGCMC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 108, 110
BciT130I CCWGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 57, 77
BisI GCNGC 2 cut(s) 99, 122
BlsI GCNGC 2 cut(s) 100, 123
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 25
BseBI CCWGG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 2 cut(s) 108, 110
BslFI GGGAC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 184
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 108, 110
BstV2I GAAGAC 1 cut(s) 25
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 180
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
CviQI GTAC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 39
FaiI YATR 3 cut(s) 126, 168, 174
FaqI GGGAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 99, 122
Fsp4HI GCNGC 2 cut(s) 99, 122
FspBI CTAG 2 cut(s) 57, 77
GluI GCNGC 2 cut(s) 99, 122
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 124
LpnPI CCDG 2 cut(s) 26, 53
Lsp1109I GCAGC 2 cut(s) 108, 110
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 2 cut(s) 57, 77
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 148
MnlI CCTC 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 2 cut(s) 100, 123
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SatI GCNGC 2 cut(s) 99, 122
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 148
SetI ASST 5 cut(s) 14, 45, 55, 94, 137
SexAI ACCWGGT 1 cut(s) 39
SgeI CNNG 8 cut(s) 34, 41, 52, 53, 69, 89, 141, 159
SspMI CTAG 2 cut(s) 57, 77
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 184
TfiI GAWTC 1 cut(s) 60
TseI GCWGC 2 cut(s) 98, 121
TspGWI ACGGA 1 cut(s) 145
XbaI TCTAGA 1 cut(s) 76
XspI CTAG 2 cut(s) 57, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.