RchiOBHm_Chr7g0223941

U3 small nucleolar RNA-associated protein 6 homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
45832486 .. 45833049
564 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGAAGAAGATGAAGAAGTCAGTTTCGGACTTTGCTGGTATCATGAGGATTGTTGATATTGATAGGCTTGCAGTCATGAGGTTTAAGGGAGATATCAAGCTCTGGTTTCGGTACCTTGAGTTCTGTCGACAGCGAAGGAATGGTAGAATGAAGAAGATCCTGGCTGATGCAATCAAATTTCACCCAAAGGTCCCTGGTATCTGGATCTATGCTGCAGCTTGGGATTTTGACCATAATTTGAATGTTGAGCTGCCCATGCTATCATGCAAAATGGGTTAA

Protein Analysis

92

Amino Acids

10.91

Weight (kDa)

10.08

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 127
AclWI GGATC 2 cut(s) 151, 212
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 2 cut(s) 159, 193
AluBI AGCT 3 cut(s) 100, 218, 250
AluI AGCT 3 cut(s) 100, 218, 250
AlwI GGATC 2 cut(s) 151, 212
ApeKI GCWGC 3 cut(s) 212, 215, 250
ApoI RAATTY 1 cut(s) 176
Asp718I GGTACC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 111
BbvI GCAGC 3 cut(s) 199, 227, 237
BciT130I CCWGG 2 cut(s) 161, 195
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 3 cut(s) 213, 216, 251
BlsI GCNGC 3 cut(s) 214, 217, 252
Bme1390I CCNGG 2 cut(s) 161, 195
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 113, 192
BmrFI CCNGG 2 cut(s) 161, 195
BmsI GCATC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 193
BseBI CCWGG 2 cut(s) 161, 195
BseDI CCNNGG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 199, 227, 237
BshNI GGYRCC 1 cut(s) 111
BslFI GGGAC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 156, 204
BspHI TCATGA 2 cut(s) 42, 75
BspLI GGNNCC 2 cut(s) 113, 192
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 2 cut(s) 151, 212
BspT107I GGYRCC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 156, 204
Bst2UI CCWGG 2 cut(s) 161, 195
BstC8I GCNNGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 159, 207
BstMBI GATC 2 cut(s) 156, 204
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 2 cut(s) 161, 195
BstSCI CCNGG 2 cut(s) 159, 193
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 199, 227, 237
BstX2I RGATCY 2 cut(s) 156, 204
BstYI RGATCY 2 cut(s) 156, 204
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 2 cut(s) 42, 75
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 112
CviAII CATG 4 cut(s) 43, 76, 256, 264
CviJI RGCY 5 cut(s) 67, 100, 164, 218, 250
CviKI_1 RGCY 5 cut(s) 67, 100, 164, 218, 250
CviQI GTAC 1 cut(s) 112
DpnI GATC 2 cut(s) 158, 206
DpnII GATC 2 cut(s) 156, 204
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 159, 193
EcoRV GATATC 1 cut(s) 94
FaeI CATG 4 cut(s) 46, 79, 259, 267
FaiI YATR 6 cut(s) 44, 77, 210, 234, 257, 265
FaqI GGGAC 1 cut(s) 176
FatI CATG 4 cut(s) 42, 75, 255, 263
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 213, 216, 251
Fsp4HI GCNGC 3 cut(s) 213, 216, 251
GluI GCNGC 3 cut(s) 213, 216, 251
Hin1II CATG 4 cut(s) 46, 79, 259, 267
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 43, 76, 202
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 4 cut(s) 71, 170, 215, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
Hsp92II CATG 4 cut(s) 46, 79, 259, 267
KpnI GGTACC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 156, 204
LpnPI CCDG 7 cut(s) 21, 88, 146, 173, 180, 187, 207
Lsp1109I GCAGC 3 cut(s) 199, 227, 237
LweI GCATC 1 cut(s) 157
MalI GATC 2 cut(s) 158, 206
MboI GATC 2 cut(s) 156, 204
MboII GAAGA 5 cut(s) 16, 19, 25, 163, 166
MflI RGATCY 2 cut(s) 156, 204
MluCI AATT 2 cut(s) 176, 235
MnlI CCTC 2 cut(s) 39, 72
MseI TTAA 2 cut(s) 84, 277
MspR9I CCNGG 2 cut(s) 161, 195
MvaI CCWGG 2 cut(s) 161, 195
MwoI GCNNNNNNNGC 1 cut(s) 256
NdeII GATC 2 cut(s) 156, 204
NlaIII CATG 4 cut(s) 46, 79, 259, 267
NlaIV GGNNCC 2 cut(s) 113, 192
PagI TCATGA 2 cut(s) 42, 75
PkrI GCNGC 3 cut(s) 214, 217, 252
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 159, 193
PspGI CCWGG 2 cut(s) 159, 193
PspN4I GGNNCC 2 cut(s) 113, 192
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
PsrI GAACNNNNNNTAC 2 cut(s) 104, 136
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 156, 204
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 84, 277
SatI GCNGC 3 cut(s) 213, 216, 251
Sau3AI GATC 2 cut(s) 156, 204
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 161, 195
SetI ASST 6 cut(s) 83, 102, 117, 192, 220, 252
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 176, 235
StyD4I CCNGG 2 cut(s) 159, 193
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 176, 235
Tru1I TTAA 2 cut(s) 84, 277
Tru9I TTAA 2 cut(s) 84, 277
TseI GCWGC 3 cut(s) 212, 215, 250
TspDTI ATGAA 3 cut(s) 17, 26, 164
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.