RchiOBHm_Chr7g0223981

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
45842617 .. 45854010
11394 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGAAGCTAGGGATTGCTCCGAGTCTACAAATCCATCATCGATCAAGGAGGTGGGAGGTTCCTGTTCCTCGTGCAATTGAAGTTATTTATTCTTCTTCATCTGGAGAGGGCACTGATCCTCGCTTTGTAAAATTGGCACCAGTATTTAGATGCTCAATGTTGAAGTCTGGTGACAAAAAAAGGCTGATTCCACAGTCTCACTGGTTTTACCCTGGTCTACAGACCCAGGTATCATGCACAAGGCTGATTATCTTTTCAAACTTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

89

Amino Acids

10.19

Weight (kDa)

10.15

Isoelectric Point (pI)

75.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AccI GTMKAC 2 cut(s) 25, 217
AclWI GGATC 1 cut(s) 110
AgsI TTSAA 3 cut(s) 80, 163, 258
AjnI CCWGG 2 cut(s) 211, 225
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 113
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BanI GGYRCC 1 cut(s) 136
BauI CACGAG 1 cut(s) 69
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 213, 227
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 213, 227
BmiI GGNNCC 2 cut(s) 60, 138
BmrFI CCNGG 2 cut(s) 213, 227
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 123
Bsa29I ATCGAT 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 211, 225
Bse1I ACTGG 2 cut(s) 140, 206
BseBI CCWGG 2 cut(s) 213, 227
BseCI ATCGAT 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 211, 225
BseNI ACTGG 2 cut(s) 140, 206
BseSI GKGCMC 1 cut(s) 113
BshNI GGYRCC 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 41, 115
BspDI ATCGAT 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 60, 138
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 136
BsrI ACTGG 2 cut(s) 140, 206
BssECI CCNNGG 2 cut(s) 211, 225
BssMI GATC 2 cut(s) 41, 115
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 213, 227
Bst4CI ACNGT 1 cut(s) 195
BstKTI GATC 2 cut(s) 44, 118
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 41, 115
BstNI CCWGG 2 cut(s) 213, 227
BstSCI CCNGG 2 cut(s) 211, 225
BstSFI CTRYAG 1 cut(s) 218
BstSLI GKGCMC 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 40
BsuTUI ATCGAT 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 111, 199
ClaI ATCGAT 1 cut(s) 40
CviAII CATG 1 cut(s) 234
CviJI RGCY 3 cut(s) 7, 184, 244
CviKI_1 RGCY 3 cut(s) 7, 184, 244
DpnI GATC 2 cut(s) 43, 117
DpnII GATC 2 cut(s) 41, 115
EcoRII CCWGG 2 cut(s) 211, 225
FaeI CATG 1 cut(s) 237
FaiI YATR 1 cut(s) 235
FatI CATG 1 cut(s) 233
FblI GTMKAC 2 cut(s) 25, 217
FspBI CTAG 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 123
Hin1II CATG 1 cut(s) 237
HinfI GANTC 2 cut(s) 22, 187
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 26, 218
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 2 cut(s) 26, 218
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 74, 237
Hsp92II CATG 1 cut(s) 237
Kzo9I GATC 2 cut(s) 41, 115
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 9 cut(s) 75, 87, 153, 153, 187, 198, 212, 225, 239
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 43, 117
MboI GATC 2 cut(s) 41, 115
MboII GAAGA 2 cut(s) 84, 87
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 2 cut(s) 75, 131
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 5 cut(s) 42, 49, 78, 100, 129
MspR9I CCNGG 2 cut(s) 213, 227
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 2 cut(s) 213, 227
NdeII GATC 2 cut(s) 41, 115
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 2 cut(s) 60, 138
NmuCI GTSAC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 187
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 211, 225
PspGI CCWGG 2 cut(s) 211, 225
PspN4I GGNNCC 2 cut(s) 60, 138
Sau3AI GATC 2 cut(s) 41, 115
SchI GAGTC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 213, 227
SduI GDGCHC 1 cut(s) 113
SetI ASST 4 cut(s) 9, 53, 60, 231
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 75, 131
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 211, 225
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 40
TasI AATT 2 cut(s) 75, 131
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 2 cut(s) 118, 206
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 17, 87
TspRI CASTG 2 cut(s) 118, 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XmiI GTMKAC 2 cut(s) 25, 217
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.