RchiOBHm_Chr7g0225281

Belongs to the FBPase class 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
47847721 .. 47850664
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
ATGGATCATGCTGCTGAAGCTCATAGAACTGACCTGATGACCATCACTCGTTTTGTTCTGAATGAGCAGTCCAAGTATCCTGAGGCACGCGGTGATTTCACCATGTTACTCAACCACATTGTTATCGGCTGCAAATTTGTCTGCTCCACTGTTAGCAAGGCCGGCCTTGCAAAGCTGCCTGGACTTGCTCGAGAGACGAATGTTCTGGCCGGCCTTGCAAAGCTATTTGGACTTGCTCGAGAGACGAATGTTCTGGGTGAAAAACAAAAGAAATTGGATGTGCTTTCAAATGAAGTTTTCATCAAGGCATTAATTAGCAGTGGTCGCACTGTAAGTCTGCTGAAGCGCGCACTTCAGTTGTCTCATTTACTCGAGTTCAATCAAACAGAACCATGTTGTATTCTTGTTTCTGAAGAGGATGAAGAGGCTACATTTGTGGAGCCATCAAAGCGCGGAAGGTACATTGTTGTTTTTGATCCATTGGATGGATCGTCTAATATCAACTGTGGTGTTTCCGTTGGAACTATATTTGGGATTTACATGGTGAAAGATAAGGAAAATCCGACTCTTGCTGATGTACTGCGCCCTGGGAGTAATATGGTAGCTGCTGGTTATTGCATGTATGGACGCTCTTGCACGCTGGTGCTTAGTACTGGAAATGGAGTCAATGGCTTCACACTTGATCCATCCCTTGGGGAATTTTTATTAACCCACCCTAATATTAGGGTATGTACACCTCATCCGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910
Pfam Domains
Protein Families
FBPase

Protein Analysis

249

Amino Acids

27.12

Weight (kDa)

6.59

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBPase PF00316 13 - 68 6.5e-14 Fructose-1-6-bisphosphatase, N-terminal domain
FBPase PF00316 70 - 113 1.8e-09 Fructose-1-6-bisphosphatase, N-terminal domain
FBPase PF00316 128 - 239 5.3e-48 Fructose-1-6-bisphosphatase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 485, 692
AccII CGCG 3 cut(s) 90, 348, 453
AciI CCGC 2 cut(s) 90, 453
AclWI GGATC 4 cut(s) 12, 470, 496, 677
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 134, 698
AcuI CTGAAG 4 cut(s) 36, 338, 362, 432
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 4 cut(s) 461, 579, 652, 733
AfiI CCNNNNNNNGG 2 cut(s) 485, 692
AgsI TTSAA 2 cut(s) 288, 379
AjnI CCWGG 2 cut(s) 178, 586
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 4 cut(s) 20, 175, 223, 605
AluI AGCT 4 cut(s) 20, 175, 223, 605
Alw26I GTCTC 3 cut(s) 188, 236, 366
AlwI GGATC 4 cut(s) 12, 470, 496, 677
Ama87I CYCGRG 3 cut(s) 189, 237, 371
AoxI GGCC 4 cut(s) 159, 163, 207, 211
ApeKI GCWGC 4 cut(s) 11, 129, 175, 605
ApoI RAATTY 2 cut(s) 134, 698
AseI ATTAAT 1 cut(s) 311
AspLEI GCGC 4 cut(s) 348, 350, 453, 585
AsuHPI GGTGA 4 cut(s) 91, 104, 269, 556
AvaI CYCGRG 3 cut(s) 189, 237, 371
AxyI CCTNAGG 1 cut(s) 81
BbvI GCAGC 3 cut(s) 116, 162, 592
BccI CCATC 4 cut(s) 50, 451, 479, 694
BciT130I CCWGG 2 cut(s) 180, 588
BciVI GTATCC 1 cut(s) 87
BcoDI GTCTC 3 cut(s) 188, 236, 366
BfuI GTATCC 1 cut(s) 87
BisI GCNGC 4 cut(s) 12, 130, 176, 606
BlsI GCNGC 4 cut(s) 13, 131, 177, 607
BmcAI AGTACT 1 cut(s) 652
Bme1390I CCNGG 2 cut(s) 180, 588
BmeT110I CYCGRG 3 cut(s) 189, 237, 371
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 2 cut(s) 180, 588
BsaBI GATNNNNATC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 586, 587, 691
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 692
Bse118I RCCGGY 2 cut(s) 161, 209
Bse1I ACTGG 1 cut(s) 658
Bse21I CCTNAGG 1 cut(s) 81
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 2 cut(s) 180, 588
BseDI CCNNGG 3 cut(s) 586, 587, 691
BseGI GGATG 5 cut(s) 283, 424, 490, 686, 739
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 485, 692
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 658
BsePI GCGCGC 1 cut(s) 346
BseXI GCAGC 3 cut(s) 116, 162, 592
Bsh1236I CGCG 3 cut(s) 90, 348, 453
BshFI GGCC 4 cut(s) 161, 165, 209, 213
BsiHKCI CYCGRG 3 cut(s) 189, 237, 371
BsiSI CCGG 2 cut(s) 162, 210
BslI CCNNNNNNNGG 2 cut(s) 485, 692
BsmAI GTCTC 3 cut(s) 188, 236, 366
BsmBI CGTCTC 2 cut(s) 188, 236
BsnI GGCC 4 cut(s) 161, 165, 209, 213
BsoBI CYCGRG 3 cut(s) 189, 237, 371
Bsp1407I TGTACA 1 cut(s) 731
Bsp143I GATC 4 cut(s) 4, 475, 488, 682
BspACI CCGC 2 cut(s) 90, 453
BspANI GGCC 4 cut(s) 161, 165, 209, 213
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 3 cut(s) 90, 348, 453
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 4 cut(s) 12, 470, 496, 677
BsrFI RCCGGY 2 cut(s) 161, 209
BsrGI TGTACA 1 cut(s) 731
BsrI ACTGG 1 cut(s) 658
BssAI RCCGGY 2 cut(s) 161, 209
BssECI CCNNGG 3 cut(s) 586, 587, 691
BssHII GCGCGC 1 cut(s) 346
BssMI GATC 4 cut(s) 4, 475, 488, 682
BssT1I CCWWGG 1 cut(s) 691
Bst2UI CCWGG 2 cut(s) 180, 588
Bst4CI ACNGT 3 cut(s) 151, 331, 506
Bst6I CTCTTC 2 cut(s) 408, 417
BstAUI TGTACA 1 cut(s) 731
BstC8I GCNNGC 5 cut(s) 88, 163, 211, 348, 638
BstDEI CTNAG 2 cut(s) 81, 647
BstF5I GGATG 5 cut(s) 283, 424, 490, 686, 739
BstFNI CGCG 3 cut(s) 90, 348, 453
BstHHI GCGC 4 cut(s) 348, 350, 453, 585
BstKTI GATC 4 cut(s) 7, 478, 491, 685
BstMAI GTCTC 3 cut(s) 188, 236, 366
BstMBI GATC 4 cut(s) 4, 475, 488, 682
BstMWI GCNNNNNNNGC 6 cut(s) 17, 162, 167, 215, 324, 448
BstNI CCWGG 2 cut(s) 180, 588
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 178, 586
BstUI CGCG 3 cut(s) 90, 348, 453
BstV1I GCAGC 3 cut(s) 116, 162, 592
Bsu36I CCTNAGG 1 cut(s) 81
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 4 cut(s) 161, 165, 209, 213
BtsCI GGATG 5 cut(s) 283, 424, 490, 686, 739
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 3 cut(s) 147, 325, 327
Cac8I GCNNGC 5 cut(s) 88, 163, 211, 348, 638
CfoI GCGC 4 cut(s) 348, 350, 453, 585
Cfr10I RCCGGY 2 cut(s) 161, 209
CseI GACGC 1 cut(s) 636
Csp6I GTAC 4 cut(s) 460, 578, 651, 732
CviAII CATG 6 cut(s) 8, 103, 393, 541, 619, 747
CviQI GTAC 4 cut(s) 460, 578, 651, 732
DdeI CTNAG 2 cut(s) 81, 647
DpnI GATC 4 cut(s) 6, 477, 490, 684
DpnII GATC 4 cut(s) 4, 475, 488, 682
DraIII CACNNNGTG 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 408, 417
EarI CTCTTC 2 cut(s) 408, 417
Eco130I CCWWGG 1 cut(s) 691
Eco57I CTGAAG 4 cut(s) 36, 338, 362, 432
Eco81I CCTNAGG 1 cut(s) 81
Eco88I CYCGRG 3 cut(s) 189, 237, 371
EcoRII CCWGG 2 cut(s) 178, 586
EcoT14I CCWWGG 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 691
Esp3I CGTCTC 2 cut(s) 188, 236
FaeI CATG 6 cut(s) 11, 106, 396, 544, 622, 750
FatI CATG 6 cut(s) 7, 102, 392, 540, 618, 746
Fnu4HI GCNGC 4 cut(s) 12, 130, 176, 606
FokI GGATG 5 cut(s) 290, 431, 497, 673, 726
FseI GGCCGGCC 2 cut(s) 165, 213
Fsp4HI GCNGC 4 cut(s) 12, 130, 176, 606
GlaI GCGC 4 cut(s) 347, 349, 452, 584
GluI GCNGC 4 cut(s) 12, 130, 176, 606
HaeIII GGCC 4 cut(s) 161, 165, 209, 213
HapII CCGG 2 cut(s) 162, 210
HgaI GACGC 1 cut(s) 636
HhaI GCGC 4 cut(s) 348, 350, 453, 585
Hin1II CATG 6 cut(s) 11, 106, 396, 544, 622, 750
Hin6I GCGC 4 cut(s) 346, 348, 451, 583
HinP1I GCGC 4 cut(s) 346, 348, 451, 583
HinfI GANTC 2 cut(s) 565, 663
HpaII CCGG 2 cut(s) 162, 210
HphI GGTGA 4 cut(s) 91, 104, 269, 556
Hpy166II GTNNAC 1 cut(s) 734
Hpy188I TCNGA 4 cut(s) 60, 412, 564, 744
Hpy188III TCNNGA 3 cut(s) 80, 191, 239
Hpy8I GTNNAC 1 cut(s) 734
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 3 cut(s) 151, 331, 506
HpyCH4V TGCA 5 cut(s) 132, 170, 218, 618, 636
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 162, 167, 215, 324, 448
HpyF3I CTNAG 2 cut(s) 81, 647
Hsp92II CATG 6 cut(s) 11, 106, 396, 544, 622, 750
HspAI GCGC 4 cut(s) 346, 348, 451, 583
KroI GCCGGC 2 cut(s) 161, 209
KroNI GCCGGC 2 cut(s) 163, 211
Kzo9I GATC 4 cut(s) 4, 475, 488, 682
LmnI GCTCC 2 cut(s) 149, 439
Lsp1109I GCAGC 3 cut(s) 116, 162, 592
MaeIII GTNAC 1 cut(s) 105
MalI GATC 4 cut(s) 6, 477, 490, 684
MboI GATC 4 cut(s) 4, 475, 488, 682
MboII GAAGA 2 cut(s) 425, 434
MluCI AATT 4 cut(s) 134, 272, 312, 698
MlyI GAGTC 2 cut(s) 559, 672
MmeI TCCRAC 2 cut(s) 499, 587
MnlI CCTC 4 cut(s) 76, 409, 418, 747
MroNI GCCGGC 2 cut(s) 161, 209
MseI TTAA 2 cut(s) 311, 707
MslI CAYNNNNRTG 1 cut(s) 641
MspI CCGG 2 cut(s) 162, 210
MspR9I CCNGG 2 cut(s) 180, 588
MvaI CCWGG 2 cut(s) 180, 588
MvnI CGCG 3 cut(s) 90, 348, 453
MwoI GCNNNNNNNGC 6 cut(s) 17, 162, 167, 215, 324, 448
NaeI GCCGGC 2 cut(s) 163, 211
NdeII GATC 4 cut(s) 4, 475, 488, 682
NgoMIV GCCGGC 2 cut(s) 161, 209
NlaIII CATG 6 cut(s) 11, 106, 396, 544, 622, 750
NlaIV GGNNCC 1 cut(s) 441
NspI RCATGY 1 cut(s) 622
OliI CACNNNNGTG 1 cut(s) 641
PaeR7I CTCGAG 3 cut(s) 189, 237, 371
PasI CCCWGGG 1 cut(s) 587
PauI GCGCGC 1 cut(s) 346
PdiI GCCGGC 2 cut(s) 163, 211
PflMI CCANNNNNTGG 2 cut(s) 485, 692
PkrI GCNGC 4 cut(s) 13, 131, 177, 607
PleI GAGTC 2 cut(s) 559, 671
PpsI GAGTC 2 cut(s) 559, 671
PshBI ATTAAT 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 178, 586
PspGI CCWGG 2 cut(s) 178, 586
PspN4I GGNNCC 1 cut(s) 441
PspXI VCTCGAGB 1 cut(s) 371
PteI GCGCGC 1 cut(s) 346
RigI GGCCGGCC 2 cut(s) 165, 213
RsaI GTAC 4 cut(s) 461, 579, 652, 733
RsaNI GTAC 4 cut(s) 460, 578, 651, 732
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 2 cut(s) 311, 707
SatI GCNGC 4 cut(s) 12, 130, 176, 606
Sau3AI GATC 4 cut(s) 4, 475, 488, 682
ScaI AGTACT 1 cut(s) 652
SchI GAGTC 2 cut(s) 559, 672
ScrFI CCNGG 2 cut(s) 180, 588
SetI ASST 7 cut(s) 22, 36, 177, 225, 461, 607, 739
Sfr274I CTCGAG 3 cut(s) 189, 237, 371
SlaI CTCGAG 3 cut(s) 189, 237, 371
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 3 cut(s) 189, 237, 371
SmoI CTYRAG 3 cut(s) 189, 237, 371
Sse9I AATT 4 cut(s) 134, 272, 312, 698
SsiI CCGC 2 cut(s) 90, 453
SspI AATATT 1 cut(s) 721
StyD4I CCNGG 2 cut(s) 178, 586
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 3 cut(s) 151, 331, 506
TaqI TCGA 3 cut(s) 190, 238, 372
TasI AATT 4 cut(s) 134, 272, 312, 698
TatI WGTACW 3 cut(s) 577, 650, 731
Tru1I TTAA 2 cut(s) 311, 707
Tru9I TTAA 2 cut(s) 311, 707
TscAI CASTG 3 cut(s) 154, 325, 334
TseI GCWGC 4 cut(s) 11, 129, 175, 605
TspDTI ATGAA 3 cut(s) 289, 306, 435
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 3 cut(s) 154, 325, 334
Van91I CCANNNNNTGG 2 cut(s) 485, 692
VspI ATTAAT 1 cut(s) 311
XapI RAATTY 2 cut(s) 134, 698
XceI RCATGY 1 cut(s) 622
XhoI CTCGAG 3 cut(s) 189, 237, 371
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.