RchiOBHm_Chr7g0226221

Belongs to the PI3 PI4-kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
49367208 .. 49367735
528 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 129 bp
ATGAAAATTCACTCTGATGTCTGGGGTCCTGCAAAGATTCCTTCTCTTTCTGGAGCTCGGTATTTTGTAACGTTTATTGATGATTGCACTCGCATGACATGGGTCCTGACAATGGTGGAGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

42

Amino Acids

4.8

Weight (kDa)

6.51

Isoelectric Point (pI)

17.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 71
AcsI RAATTY 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 26, 103
AvaII GGWCC 2 cut(s) 26, 103
BanII GRGCYC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 58
Bme18I GGWCC 2 cut(s) 26, 103
BmgT120I GGNCC 2 cut(s) 26, 103
BmiI GGNNCC 2 cut(s) 27, 104
BoxI GACNNNNGTC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 72
BsaXI ACNNNNNCTCC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 27, 104
BstPAI GACNNNNGTC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 26, 103
CviAII CATG 2 cut(s) 94, 99
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 26, 103
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoO109I RGGNCCY 2 cut(s) 26, 103
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 2 cut(s) 97, 102
FaiI YATR 2 cut(s) 95, 100
FatI CATG 2 cut(s) 93, 98
FriOI GRGCYC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 72
Hin1II CATG 2 cut(s) 97, 102
HinfI GANTC 1 cut(s) 37
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 51, 106
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 32, 87
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 2 cut(s) 97, 102
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 4 cut(s) 7, 36, 42, 119
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 67
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 15, 92
NlaIII CATG 2 cut(s) 97, 102
NlaIV GGNNCC 2 cut(s) 27, 104
PfeI GAWTC 1 cut(s) 37
PpuMI RGGWCCY 2 cut(s) 26, 103
PshAI GACNNNNGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 58
Psp1406I AACGTT 1 cut(s) 71
Psp5II RGGWCCY 2 cut(s) 26, 103
PspN4I GGNNCC 2 cut(s) 27, 104
PspPI GGNCC 2 cut(s) 26, 103
PspPPI RGGWCCY 2 cut(s) 26, 103
RseI CAYNNNNRTG 2 cut(s) 15, 92
SacI GAGCTC 1 cut(s) 58
Sau96I GGNCC 2 cut(s) 26, 103
SduI GDGCHC 1 cut(s) 58
SetI ASST 2 cut(s) 58, 74
SgeI CNNG 8 cut(s) 34, 41, 63, 69, 102, 106, 111, 118
SinI GGWCC 2 cut(s) 26, 103
SmiMI CAYNNNNRTG 2 cut(s) 15, 92
Sse9I AATT 1 cut(s) 6
SstI GAGCTC 1 cut(s) 58
TaiI ACGT 1 cut(s) 74
TasI AATT 1 cut(s) 6
TfiI GAWTC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 26, 103
XapI RAATTY 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.