RchiOBHm_Chr7g0226651

Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
49954496 .. 49955254
759 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGCAAATTTTATGTTTTCTACAGATGAAGGACGACGCGTATAGGGTATTTAGTCTTGGAACCTTATCTCCTCCTCGATGCAGCTGCCTCTCTCCTTCTTCCCTAAAAGCCCCTATGTATGGAGGACTAAAGAACGTTGGAGATTTGAAGAGGCAACCATTCTATGTGTTTCTTCATTGTACTTGCCCTGTACATTCACTTCTTCTTGGAGCTTTGCTATGTCTCCTGGGTGGACTCCCCTTCTTCATTTGGGGAATGGGAGTGAGAGTGGTATATGTTCTCCATGCAACTTTGTTGGTTAATTCGGTTGGCCACATGTGGGGATATCAAGTATGGAAGACTGGTGATTTCTCGGAACAATTGGCTCTTGGGATTCCTGGTGCTAGGAGAAGGCTGGCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FA_desaturase

Protein Analysis

134

Amino Acids

14.86

Weight (kDa)

9.35

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AclI AACGTT 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 2 cut(s) 181, 192
AfiI CCNNNNNNNGG 2 cut(s) 119, 319
AflIII ACRYGT 2 cut(s) 36, 315
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 2 cut(s) 225, 376
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 84, 212
AluI AGCT 2 cut(s) 84, 212
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 81, 84
ApoI RAATTY 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 356
BalI TGGCCA 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 2 cut(s) 71, 93
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 2 cut(s) 227, 378
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 2 cut(s) 82, 85
BlsI GCNGC 2 cut(s) 83, 86
Bme1390I CCNGG 2 cut(s) 227, 378
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 227, 378
BmsI GCATC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 226
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 319
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 2 cut(s) 227, 378
BseDI CCNNGG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 119, 319
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 60, 63
BseXI GCAGC 2 cut(s) 71, 93
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 119, 319
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 190
BspANI GGCC 1 cut(s) 312
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 190
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 227, 378
Bst6I CTCTTC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 396
BstFNI CGCG 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 227
BstNI CCWGG 2 cut(s) 227, 378
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 225, 376
BstSFI CTRYAG 1 cut(s) 20
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 71, 93
BstV2I GAAGAC 1 cut(s) 344
BsuRI GGCC 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 396
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 180, 191
CviAII CATG 2 cut(s) 284, 316
CviJI RGCY 6 cut(s) 84, 110, 212, 312, 365, 394
CviKI_1 RGCY 6 cut(s) 84, 110, 212, 312, 365, 394
CviQI GTAC 2 cut(s) 180, 191
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 326
EcoRII CCWGG 2 cut(s) 225, 376
EcoRV GATATC 1 cut(s) 326
FaeI CATG 2 cut(s) 287, 319
FatI CATG 2 cut(s) 283, 315
Fnu4HI GCNGC 2 cut(s) 82, 85
Fsp4HI GCNGC 2 cut(s) 82, 85
FspBI CTAG 1 cut(s) 384
GluI GCNGC 2 cut(s) 82, 85
HaeIII GGCC 1 cut(s) 312
HgaI GACGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 287, 319
HinfI GANTC 2 cut(s) 234, 373
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 1 cut(s) 355
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 22, 105, 250, 384
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 3 cut(s) 4, 81, 287
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 2 cut(s) 287, 319
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 201, 212, 239, 327, 363, 380, 390
Lsp1109I GCAGC 2 cut(s) 71, 93
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 135
MboII GAAGA 6 cut(s) 90, 160, 164, 194, 235, 349
MfeI CAATTG 1 cut(s) 359
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 6, 301, 359
MluI ACGCGT 1 cut(s) 36
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 5 cut(s) 81, 84, 98, 116, 144
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 227, 378
MunI CAATTG 1 cut(s) 359
MvaI CCWGG 2 cut(s) 227, 378
MvnI CGCG 1 cut(s) 38
NlaIII CATG 2 cut(s) 287, 319
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 1 cut(s) 319
PciI ACATGT 1 cut(s) 315
PfeI GAWTC 1 cut(s) 373
PkrI GCNGC 2 cut(s) 83, 86
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 315
Psp1406I AACGTT 1 cut(s) 135
Psp6I CCWGG 2 cut(s) 225, 376
PspGI CCWGG 2 cut(s) 225, 376
PspN4I GGNNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 84
RsaI GTAC 2 cut(s) 181, 192
RsaNI GTAC 2 cut(s) 180, 191
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 82, 85
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 227, 378
SetI ASST 4 cut(s) 65, 86, 138, 214
SfaNI GCATC 1 cut(s) 68
SfcI CTRYAG 1 cut(s) 20
Sse9I AATT 3 cut(s) 6, 301, 359
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 225, 376
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 76
TasI AATT 3 cut(s) 6, 301, 359
TatI WGTACW 2 cut(s) 179, 190
TfiI GAWTC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseI GCWGC 2 cut(s) 81, 84
TspDTI ATGAA 3 cut(s) 41, 164, 235
XapI RAATTY 1 cut(s) 6
XceI RCATGY 1 cut(s) 319
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.