Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

50688015 .. 50689815

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAACGTTGTTTCTGGGAAAAGAAAATATACAAGCTTAGTGGGTTATTCGAGCAGCAAGCTCGCACAGGCGAGGGATCTACCCAGAATCGTTCAAGCTGGTTATCGTTTGATACCTTATTTTATCTTTAGCCCTCAAGAAGGTTCGAGGAGTTCTCTCTTTGCAGCCACTGATCCTCTGGTTCCAGAGTACCGTCAATTGTTGAAATCAGATGACTTTCCTGTTTGCACTTTCATTTCTCAAGATTGCAATCCAACCAATCCTTCTGAAGAAGCTCATAATGTTGAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001523 GO:0003674 GO:0003824 GO:0004033 GO:0004745 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006081 GO:0006629 GO:0006720 GO:0006721 GO:0008106 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010073 GO:0010817 GO:0012505 GO:0016020 GO:0016101 GO:0016491 GO:0016614 GO:0016616 GO:0031984 GO:0032501 GO:0032502 GO:0034308 GO:0034754 GO:0042175 GO:0042445 GO:0042572 GO:0042574 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048507 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0052650 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0098827 GO:1901615 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

6.55

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	6
AclWI	GGATC	2 cut(s)	84, 167
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	95, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	4 cut(s)	36, 61, 98, 275
AluI	AGCT	4 cut(s)	36, 61, 98, 275
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	84, 167
AlwNI	CAGNNNCTG	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	54, 164
BbvI	GCAGC	2 cut(s)	66, 176
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BcoDI	GTCTC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	55, 165
BlsI	GCNGC	2 cut(s)	56, 166
BmiI	GGNNCC	1 cut(s)	183
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpuEI	CTTGAG	2 cut(s)	120, 225
BsaBI	GATNNNNATC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	66, 176
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	76, 172
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	84, 167
BssMI	GATC	2 cut(s)	76, 172
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	59, 63
BstDEI	CTNAG	1 cut(s)	37
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstKTI	GATC	2 cut(s)	79, 175
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	76, 172
BstV1I	GCAGC	2 cut(s)	66, 176
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	59, 63
CaiI	CAGNNNCTG	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviJI	RGCY	6 cut(s)	36, 61, 98, 132, 167, 275
CviKI_1	RGCY	6 cut(s)	36, 61, 98, 132, 167, 275
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	2 cut(s)	78, 174
DpnII	GATC	2 cut(s)	76, 172
Eco57I	CTGAAG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	138
FaiI	YATR	2 cut(s)	30, 279
Fnu4HI	GCNGC	2 cut(s)	55, 165
Fsp4HI	GCNGC	2 cut(s)	55, 165
GluI	GCNGC	2 cut(s)	55, 165
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	211, 268
Hpy188III	TCNNGA	3 cut(s)	137, 185, 242
HpyAV	CCTTC	2 cut(s)	134, 273
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	164, 228, 249
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	76, 172
LpnPI	CCDG	6 cut(s)	53, 84, 97, 164, 198, 234
Lsp1109I	GCAGC	2 cut(s)	66, 176
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	78, 174
MboI	GATC	2 cut(s)	76, 172
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	4 cut(s)	66, 141, 144, 186
MseI	TTAA	1 cut(s)	292
MunI	CAATTG	1 cut(s)	197
NdeII	GATC	2 cut(s)	76, 172
NlaIV	GGNNCC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	56, 166
Psp1406I	AACGTT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	2 cut(s)	55, 165
Sau3AI	GATC	2 cut(s)	76, 172
SetI	ASST	7 cut(s)	9, 38, 63, 100, 118, 145, 277
SmlI	CTYRAG	2 cut(s)	135, 240
SmoI	CTYRAG	2 cut(s)	135, 240
Sse9I	AATT	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	50, 146
TasI	AATT	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	54, 164
TspDTI	ATGAA	2 cut(s)	17, 223
TspRI	CASTG	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	138
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.