Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

51947894 .. 51951818

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGAGGAGGGGGTTATGTTCCAGACACAAGATATGTTCTTCATGACATTGACCAGGAGGCTAAGGAGCAAGCACTGCTCTATCACAGTGAGCGTTTGGCAATCGCATATGGCCTGATTAGTACTCCGGCAAGATACCTCTTAGGATCATTAACAACCTCCGTGTCTGTGGTGACTGCCACAGTGCCATTAAGATCATGTCCAAGATTGTTGGAAGGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

74

Amino Acids

8.11

Weight (kDa)

6.71

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	5 - 46	2.7e-12	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	154
AfaI	GTAC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	54
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	56
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	56
BseRI	GAGGAG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	128
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	146, 194
BspANI	GGCC	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	43
BspPI	GGATC	1 cut(s)	154
BssMI	GATC	2 cut(s)	146, 194
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	89, 184
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	63, 142
BstKTI	GATC	2 cut(s)	149, 197
BstMBI	GATC	2 cut(s)	146, 194
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	74, 94, 189
Cac8I	GCNNGC	1 cut(s)	72
CciI	TCATGA	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	44, 198
CviJI	RGCY	2 cut(s)	62, 114
CviKI_1	RGCY	2 cut(s)	62, 114
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	2 cut(s)	63, 142
DpnI	GATC	2 cut(s)	148, 196
DpnII	GATC	2 cut(s)	146, 194
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	47, 201
FaiI	YATR	6 cut(s)	18, 36, 45, 109, 111, 199
FatI	CATG	2 cut(s)	43, 197
FauNDI	CATATG	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	2 cut(s)	47, 201
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	23, 44
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	2 cut(s)	89, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	2 cut(s)	63, 142
Hsp92II	CATG	2 cut(s)	47, 201
Kzo9I	GATC	2 cut(s)	146, 194
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	36, 41, 68, 128, 141
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	148, 196
MboI	GATC	2 cut(s)	146, 194
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	3 cut(s)	52, 149, 169
MseI	TTAA	3 cut(s)	152, 191, 223
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	146, 194
NlaIII	CATG	2 cut(s)	47, 201
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	152, 191, 223
Sau3AI	GATC	2 cut(s)	146, 194
ScaI	AGTACT	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	2 cut(s)	141, 161
Sse9I	AATT	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	89, 184
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	122
Tru1I	TTAA	3 cut(s)	152, 191, 223
Tru9I	TTAA	3 cut(s)	152, 191, 223
TscAI	CASTG	3 cut(s)	81, 94, 189
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	3 cut(s)	81, 94, 189
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.