Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

52089059 .. 52089515

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGAGAGGGTTCTGACTTGAGTGGACTAGTACCAGGTGGGAGACCTCCTGTAAAGCTCCATCAAGTGAACCTCAGTCACGCGAGATCATATGTTTGTTCAGTGGATGATTGTCATTGCAGCTACAGAAGAAAAGACCACTTGACTCGCCATCTATTTCATCACCAAGGAAAACTCTTTAAGTGTCCAATTGAGAACTGCAATAGTGAGTTTGCCTTCCAAGGTAACATGACTAGGCATGTCAGTGAACTTCATGGTGAGGATTGCCCTTCGGCCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCGGAAAGGTGTTCAGATTTGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

115

Amino Acids

12.97

Weight (kDa)

8.41

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AciI	CCGC	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	273
AfaI	GTAC	1 cut(s)	33
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	58, 123
AluI	AGCT	2 cut(s)	58, 123
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	120, 295
AsuHPI	GGTGA	2 cut(s)	155, 269
BbvI	GCAGC	2 cut(s)	132, 307
BccI	CCATC	3 cut(s)	69, 159, 275
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	37
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	3 cut(s)	29, 234, 346
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	2 cut(s)	121, 296
BlsI	GCNGC	2 cut(s)	122, 297
Bme1390I	CCNGG	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	40
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	166, 220
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	166, 220
BseGI	GGATG	2 cut(s)	112, 290
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	132, 307
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	166, 220
BssMI	GATC	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	166, 220
Bst2UI	CCWGG	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	112, 290
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	2 cut(s)	242, 302
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	132, 307
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	112, 290
BtsIMutI	CAGTG	2 cut(s)	108, 250
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	4 cut(s)	229, 239, 254, 299
CviJI	RGCY	3 cut(s)	58, 123, 275
CviKI_1	RGCY	3 cut(s)	58, 123, 275
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	273
Eco130I	CCWWGG	2 cut(s)	166, 220
Eco31I	GGTCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	166, 220
ErhI	CCWWGG	2 cut(s)	166, 220
FaeI	CATG	4 cut(s)	232, 242, 257, 302
FaiI	YATR	6 cut(s)	91, 93, 230, 240, 255, 300
FatI	CATG	4 cut(s)	228, 238, 253, 298
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	121, 296
FokI	GGATG	2 cut(s)	119, 297
Fsp4HI	GCNGC	2 cut(s)	121, 296
FspBI	CTAG	3 cut(s)	29, 234, 346
GluI	GCNGC	2 cut(s)	121, 296
HaeIII	GGCC	1 cut(s)	275
Hin1II	CATG	4 cut(s)	232, 242, 257, 302
HinfI	GANTC	1 cut(s)	145
HphI	GGTGA	2 cut(s)	155, 269
Hpy166II	GTNNAC	3 cut(s)	26, 70, 248
Hpy188I	TCNGA	3 cut(s)	16, 291, 335
Hpy8I	GTNNAC	3 cut(s)	26, 70, 248
HpyAV	CCTTC	2 cut(s)	226, 279
HpyCH4V	TGCA	2 cut(s)	120, 201
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	4 cut(s)	232, 242, 257, 302
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	21, 48, 63
Lsp1109I	GCAGC	2 cut(s)	132, 307
MabI	ACCWGGT	1 cut(s)	34
MaeI	CTAG	3 cut(s)	29, 234, 346
MaeIII	GTNAC	2 cut(s)	77, 224
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	1 cut(s)	141
MfeI	CAATTG	1 cut(s)	189
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	3 cut(s)	57, 83, 253
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	232, 242, 257, 302
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	2 cut(s)	242, 302
PkrI	GCNGC	2 cut(s)	122, 297
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	121, 296
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	8 cut(s)	40, 49, 60, 75, 125, 226, 319, 330
SexAI	ACCWGGT	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
SpeI	ACTAGT	1 cut(s)	28
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	3 cut(s)	29, 234, 346
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	2 cut(s)	166, 220
TasI	AATT	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	108, 250
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	120, 295
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	149, 242
TspRI	CASTG	2 cut(s)	108, 250
XceI	RCATGY	2 cut(s)	242, 302
XspI	CTAG	3 cut(s)	29, 234, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.