RchiOBHm_Chr7g0229031

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
52365271 .. 52366997
1727 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGGTGTTGGTACAAAACAATTACTCTGCTGGAGGAAAGTATTCAAAACCATTGATTGACTATCTACAAAACCTTCCAGAGAATGAAAAGGTTACAAGCTGTGTTATTTTGGTTGGTCACAGTAGTGGTGGTGCCTGTGTTTCTTATGCACTGGAGCACTTTCCGCAAAAAATTTTAAAAGCAATATTCATCTGTGCCACTATGGTGTCTAATGATCAGAGACCTTCTGACGTATTTGCTGAAGATTTTATGATTCATGGAAATGGAAAAGACCAGCCTCCTACAGGATTTATGTTTGAGAAAGAACAGATGAAAGGGTTATATTTCAATCAATCTCCTGCAAAGGTATGTCGCAACTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

6.81

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 35 - 71 1.8e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AciI CCGC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 45, 328
AleI CACNNNNGTG 2 cut(s) 123, 203
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 159
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 214
BfmI CTRYAG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 51, 173
BsaI GGTCTC 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 164
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 156
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 122
BstENI CCTNNNNNAGG 1 cut(s) 282
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 149
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 257
CviJI RGCY 2 cut(s) 99, 277
CviKI_1 RGCY 2 cut(s) 99, 277
CviQI GTAC 1 cut(s) 11
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
DraI TTTAAA 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 261
EcoNI CCTNNNNNAGG 1 cut(s) 282
FaeI CATG 1 cut(s) 260
FaiI YATR 7 cut(s) 147, 203, 251, 258, 293, 322, 349
FatI CATG 1 cut(s) 256
FbaI TGATCA 1 cut(s) 214
GsuI CTGGAG 2 cut(s) 51, 173
Hin1II CATG 1 cut(s) 260
HinfI GANTC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 219, 229
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 2 cut(s) 83, 234
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 2 cut(s) 149, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 7 cut(s) 15, 90, 137, 148, 270, 287, 351
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 91, 116
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 19, 171
MnlI CCTC 2 cut(s) 26, 288
MroXI GAANNNNTTC 1 cut(s) 40
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 3 cut(s) 123, 203, 261
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 116
OliI CACNNNNGTG 2 cut(s) 123, 203
PdmI GAANNNNTTC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 133
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 3 cut(s) 123, 203, 261
SaqAI TTAA 1 cut(s) 176
Sau3AI GATC 1 cut(s) 214
SduI GDGCHC 1 cut(s) 159
SetI ASST 6 cut(s) 75, 93, 101, 226, 234, 348
SfcI CTRYAG 1 cut(s) 282
SgeI CNNG 9 cut(s) 42, 89, 108, 147, 164, 269, 286, 297, 350
SmiMI CAYNNNNRTG 3 cut(s) 123, 203, 261
Sse9I AATT 2 cut(s) 19, 171
SsiI CCGC 1 cut(s) 164
SspI AATATT 1 cut(s) 186
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 234
TasI AATT 2 cut(s) 19, 171
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 4 cut(s) 99, 178, 245, 326
TspRI CASTG 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 282
XapI RAATTY 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.