RchiOBHm_Chr7g0231521

UPF0183 protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
55118530 .. 55122092
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGTCTTTGATTGGTTCTCGGATGGAACCACACCAGTTACTTGCCTTTGTCTCCATATACGATAGTTCTACCGATAAAAAAGTTGGTGTCGGATCCTTGATGGATAAGGCTTCTGCTCCTCCATTACCTATTGGCAGTGTCTATATGGAAGATGTGCATGTCAAGGATGTTTGGACTGAATTGGGTCAGATTTGTGGGCAGAATTTTGGATTCAGTAATATTTGTTTCTCAGAGTCATGCTCTATGTGGGGTGATGATGTTCAAAAGCTTTTAGACTTGCATTCGGTCCGTGATTATTTTCTTTTGAGGATGGAGAAGAGACGAAATGGGGAAGCAGATTTGGTGGTGTTCTGCCACAAAGGATCTGATTCTAAAAAGGAACTAGGACACCCACATTCAGAGAGTACAATTTTCTCTGAGATGGAAGTTCTTGGGGACTGTGGTCGAGCTGCCATCCACACACAAGGTTCTACAAGCAATCCGTTTGGATTTACTTTTGTATATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

18.7

Weight (kDa)

5.41

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 87, 100, 370
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 406
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 2 cut(s) 268, 449
AluI AGCT 2 cut(s) 268, 449
Alw26I GTCTC 2 cut(s) 55, 313
AlwI GGATC 3 cut(s) 87, 100, 370
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 286
BamHI GGATCC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 436
BccI CCATC 5 cut(s) 16, 94, 304, 415, 461
BcoDI GTCTC 2 cut(s) 55, 313
BfaI CTAG 1 cut(s) 383
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 27, 94
BoxI GACNNNNGTC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bse1I ACTGG 1 cut(s) 34
BseGI GGATG 4 cut(s) 27, 172, 315, 453
BseMII CTCAG 2 cut(s) 243, 408
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 436
BslFI GGGAC 1 cut(s) 449
BsmAI GTCTC 2 cut(s) 55, 313
BsmBI CGTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 92, 362
BspCNI CTCAG 2 cut(s) 242, 409
BspLI GGNNCC 2 cut(s) 27, 94
BspPI GGATC 3 cut(s) 87, 100, 370
BsrI ACTGG 1 cut(s) 34
BssMI GATC 2 cut(s) 92, 362
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 229, 417
BstF5I GGATG 4 cut(s) 27, 172, 315, 453
BstKTI GATC 2 cut(s) 95, 365
BstMAI GTCTC 2 cut(s) 55, 313
BstMBI GATC 2 cut(s) 92, 362
BstNSI RCATGY 1 cut(s) 161
BstPAI GACNNNNGTC 1 cut(s) 441
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 2 cut(s) 92, 362
BstYI RGATCY 2 cut(s) 92, 362
BtsCI GGATG 4 cut(s) 27, 172, 315, 453
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 286
CpoI CGGWCCG 1 cut(s) 286
Csp6I GTAC 1 cut(s) 405
CspI CGGWCCG 1 cut(s) 286
CviAII CATG 2 cut(s) 158, 237
CviJI RGCY 3 cut(s) 110, 268, 449
CviKI_1 RGCY 3 cut(s) 110, 268, 449
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 2 cut(s) 229, 417
DpnI GATC 2 cut(s) 94, 364
DpnII GATC 2 cut(s) 92, 362
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 286
Esp3I CGTCTC 1 cut(s) 313
FaeI CATG 2 cut(s) 161, 240
FaiI YATR 9 cut(s) 56, 58, 144, 146, 159, 238, 245, 502, 504
FaqI GGGAC 1 cut(s) 449
FatI CATG 2 cut(s) 157, 236
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 4 cut(s) 34, 179, 322, 440
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 1 cut(s) 383
GluI GCNGC 1 cut(s) 450
Hin1II CATG 2 cut(s) 161, 240
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 210, 233, 368
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 7 cut(s) 21, 92, 189, 232, 367, 400, 418
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4V TGCA 2 cut(s) 157, 280
HpyF3I CTNAG 2 cut(s) 229, 417
Hsp92II CATG 2 cut(s) 161, 240
Kzo9I GATC 2 cut(s) 92, 362
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 436
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 36
MalI GATC 2 cut(s) 94, 364
MboI GATC 2 cut(s) 92, 362
MboII GAAGA 2 cut(s) 161, 328
MflI RGATCY 2 cut(s) 92, 362
MluCI AATT 3 cut(s) 179, 202, 408
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 2 cut(s) 129, 300
MseI TTAA 1 cut(s) 508
Mva1269I GAATGC 1 cut(s) 280
NdeII GATC 2 cut(s) 92, 362
NlaIII CATG 2 cut(s) 161, 240
NlaIV GGNNCC 2 cut(s) 27, 94
NspI RCATGY 1 cut(s) 161
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 210, 368
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PshAI GACNNNNGTC 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 27, 94
PspPI GGNCC 1 cut(s) 286
PsuI RGATCY 2 cut(s) 92, 362
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
Rsr2I CGGWCCG 1 cut(s) 286
RsrII CGGWCCG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 508
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 2 cut(s) 92, 362
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 242
SetI ASST 4 cut(s) 130, 270, 451, 469
SinI GGWCC 1 cut(s) 286
Sse9I AATT 3 cut(s) 179, 202, 408
SspI AATATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 445
TaqII GACCGA 1 cut(s) 274
TasI AATT 3 cut(s) 179, 202, 408
TatI WGTACW 1 cut(s) 404
TfiI GAWTC 2 cut(s) 210, 368
Tru1I TTAA 1 cut(s) 508
Tru9I TTAA 1 cut(s) 508
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 449
TspGWI ACGGA 2 cut(s) 278, 471
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 202
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.