Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

56119493 .. 56120095

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCGAGTGCTGACCAAATGGTGTTCTACAGATGCCACATTGATGCTTTCCAGGACTCGCTCTACGTTTATGCCAATCGCCAATTCTACCGAGAATGCAACATTTACGGAACAGTTGATTTCATTTTCGGAAACTTAGCAGTAGTCCTCCAAAACTGTAAGGTGTTCCCCAAGGTACCAATGGTTGGCCAGCAGAACACAATCACGGCACAAGGCAAAATCGACCCCAACCAAAACACGGGAATCGCATTTCAGAACTGCACCATTTCGCCTTTTGGAGACTTGTCTTCGGTTAAGACTTACCTCCGGAGACCTTGGAAGAATTACTCCACAACAGTGTACATGCAAACATTCATGGGAAGCTTGATTCACCCAGATGGATGGTTGCCATGGGTAGGCACAACAGCACCTGAGCCAATGACAATCAATTTATTCAATTATCAAACATTCAACAAAAATACGTCCCTGCCCACTACAGCAATGACAATCAATCAACCAAAAATCCAAAACATTCCCAATTATCAACCCATCATCAACAACCCATCATCAATGACAATCAATCAACCAAAAATTCAATACCTGGGATCTGGATTGAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0006109 GO:0008150 GO:0016787 GO:0016788 GO:0019222 GO:0030234 GO:0030599 GO:0031323 GO:0032881 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0052689 GO:0060255 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772 GO:1902066 GO:1903338

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

200

Amino Acids

22.7

Weight (kDa)

9.03

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	2 - 141	5.5e-62	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AccB7I	CCANNNNNTGG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	306
AclWI	GGATC	1 cut(s)	592
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	570
AfaI	GTAC	2 cut(s)	177, 341
AfiI	CCNNNNNNNGG	3 cut(s)	185, 238, 395
AgsI	TTSAA	4 cut(s)	436, 451, 575, 595
AjnI	CCWGG	2 cut(s)	51, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	273, 304
AlwI	GGATC	1 cut(s)	592
AlwNI	CAGNNNCTG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	570
Asp718I	GGTACC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	4 cut(s)	371, 375, 536, 550
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	53, 581
BcoDI	GTCTC	2 cut(s)	273, 304
BfmI	CTRYAG	2 cut(s)	28, 474
Bme1390I	CCNGG	2 cut(s)	53, 581
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	53, 581
BmsI	GCATC	2 cut(s)	23, 34
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	4 cut(s)	171, 314, 389, 580
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 238, 395
Bse3DI	GCAATG	1 cut(s)	486
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	53, 581
BseDI	CCNNGG	4 cut(s)	171, 314, 389, 580
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	3 cut(s)	185, 238, 395
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	402
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	3 cut(s)	185, 238, 395
BsmAI	GTCTC	2 cut(s)	273, 304
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	306
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	584
Bsp19I	CCATGG	1 cut(s)	389
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	403
BspEI	TCCGGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	4 cut(s)	171, 314, 389, 580
BssMI	GATC	1 cut(s)	584
BssT1I	CCWWGG	3 cut(s)	171, 314, 389
Bst2UI	CCWGG	2 cut(s)	53, 581
Bst4CI	ACNGT	3 cut(s)	115, 158, 337
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	136, 411
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	386
BstKTI	GATC	1 cut(s)	587
BstMAI	GTCTC	2 cut(s)	273, 304
BstMBI	GATC	1 cut(s)	584
BstNI	CCWGG	2 cut(s)	53, 581
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	2 cut(s)	51, 579
BstSFI	CTRYAG	2 cut(s)	28, 474
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	386
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	176, 340
CviAII	CATG	3 cut(s)	343, 355, 390
CviJI	RGCY	4 cut(s)	189, 363, 415, 598
CviKI_1	RGCY	4 cut(s)	189, 363, 415, 598
CviQI	GTAC	2 cut(s)	176, 340
DdeI	CTNAG	2 cut(s)	136, 411
DpnI	GATC	1 cut(s)	586
DpnII	GATC	1 cut(s)	584
EaeI	YGGCCR	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	171, 314, 389
Eco31I	GGTCTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	51, 579
EcoT14I	CCWWGG	3 cut(s)	171, 314, 389
ErhI	CCWWGG	3 cut(s)	171, 314, 389
FaeI	CATG	3 cut(s)	346, 358, 393
FaiI	YATR	4 cut(s)	72, 344, 356, 391
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	342, 354, 389
FokI	GGATG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	3 cut(s)	346, 358, 393
HindIII	AAGCTT	1 cut(s)	361
HinfI	GANTC	3 cut(s)	56, 243, 367
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	131, 255
Hpy188III	TCNNGA	2 cut(s)	307, 588
Hpy8I	GTNNAC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	115, 158, 337
HpyCH4IV	ACGT	2 cut(s)	66, 461
HpyCH4V	TGCA	3 cut(s)	99, 261, 346
HpyF3I	CTNAG	2 cut(s)	136, 411
HpySE526I	ACGT	2 cut(s)	66, 461
Hsp92II	CATG	3 cut(s)	346, 358, 393
Kpn2I	TCCGGA	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	584
LweI	GCATC	2 cut(s)	23, 34
MaeII	ACGT	2 cut(s)	66, 461
MalI	GATC	1 cut(s)	586
MboI	GATC	1 cut(s)	584
MboII	GAAGA	2 cut(s)	279, 331
MflI	RGATCY	1 cut(s)	584
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	6 cut(s)	83, 322, 427, 436, 517, 570
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	2 cut(s)	158, 314
Mox20I	TGGCCA	1 cut(s)	189
MroI	TCCGGA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	3 cut(s)	42, 335, 375
Msp20I	TGGCCA	1 cut(s)	189
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	53, 581
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	53, 581
NcoI	CCATGG	1 cut(s)	389
NdeII	GATC	1 cut(s)	584
NlaIII	CATG	3 cut(s)	346, 358, 393
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	335
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	243, 367
PflMI	CCANNNNNTGG	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	51
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	51, 579
PspGI	CCWGG	2 cut(s)	51, 579
PspN4I	GGNNCC	1 cut(s)	177
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	2 cut(s)	177, 341
RsaNI	GTAC	2 cut(s)	176, 340
RseI	CAYNNNNRTG	3 cut(s)	42, 335, 375
SaqAI	TTAA	1 cut(s)	294
Sau3AI	GATC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	53, 581
SetI	ASST	9 cut(s)	69, 165, 177, 306, 316, 365, 412, 464, 582
SfaNI	GCATC	2 cut(s)	23, 34
SfcI	CTRYAG	2 cut(s)	28, 474
SmiMI	CAYNNNNRTG	3 cut(s)	42, 335, 375
Sse9I	AATT	6 cut(s)	83, 322, 427, 436, 517, 570
StyD4I	CCNGG	2 cut(s)	51, 579
StyI	CCWWGG	3 cut(s)	171, 314, 389
TaaI	ACNGT	3 cut(s)	115, 158, 337
TaiI	ACGT	2 cut(s)	69, 464
TaqI	TCGA	2 cut(s)	5, 222
TasI	AATT	6 cut(s)	83, 322, 427, 436, 517, 570
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	243, 367
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	342
TspDTI	ATGAA	2 cut(s)	112, 343
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.