RchiOBHm_Chr7g0232941

Ripening-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
57142469 .. 57142816
348 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGTCGTATAACACCCAGGCATACCTCACTCTCAACAGCTTTGAGGCAGAAGGTGATGGAGGAGGCCCATCCGAATGTGATGGCAAATATCACAAGTACATGTTGTGGCACTATCCACTGGTTGTTACGTACAATGGTGGATCAATATGCCTTAACAACATCAGAATTAATGGTGATGGGCGGAGTGTGGTAGCCATGGTGGTAGATGAGTGTGACTCTACTGAGGGATGTGATGCTTATCAGCCTCCTTCTCCCAACAACATTGATGCCTCCAAGGCTGCCTGGAAAGCCTTCGGTATATCTGAGGACAACTGGGGTGGTTTGGATATTACATGGTCCGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.51

Weight (kDa)

4.21

Isoelectric Point (pI)

68.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KWL1 PF24300 4 - 115 3e-24 Kiwellin-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 148
AfaI GTAC 2 cut(s) 98, 131
AflIII ACRYGT 1 cut(s) 99
AjnI CCWGG 2 cut(s) 15, 281
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
AlwI GGATC 1 cut(s) 148
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 278
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 65, 336
AsuHPI GGTGA 2 cut(s) 65, 185
AvaII GGWCC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 265
BccI CCATC 4 cut(s) 50, 74, 76, 170
BciT130I CCWGG 2 cut(s) 17, 283
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 17, 283
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 65, 336
BmrFI CCNGG 2 cut(s) 17, 283
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 223, 256, 331
BmuI ACTGGG 1 cut(s) 322
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BsaAI YACGTR 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 15, 195, 273
Bse1I ACTGG 2 cut(s) 123, 317
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 2 cut(s) 17, 283
BseDI CCNNGG 3 cut(s) 15, 195, 273
BseGI GGATG 2 cut(s) 68, 233
BseJI GATNNNNATC 1 cut(s) 237
BseMII CTCAG 2 cut(s) 213, 294
BseNI ACTGG 2 cut(s) 123, 317
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 66
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 140
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 214, 295
BspPI GGATC 1 cut(s) 148
BsrI ACTGG 2 cut(s) 123, 317
BssECI CCNNGG 3 cut(s) 15, 195, 273
BssMI GATC 1 cut(s) 140
BssT1I CCWWGG 2 cut(s) 195, 273
Bst2UI CCWGG 2 cut(s) 17, 283
BstBAI YACGTR 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 222, 303, 345
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 68, 233
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 2 cut(s) 275, 287
BstNI CCWGG 2 cut(s) 17, 283
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 15, 281
BstSNI TACGTA 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 265
BsuRI GGCC 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 68, 233
BtsIMutI CAGTG 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 65, 336
Csp6I GTAC 2 cut(s) 97, 130
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 3 cut(s) 100, 196, 333
CviJI RGCY 6 cut(s) 39, 66, 194, 244, 278, 290
CviKI_1 RGCY 6 cut(s) 39, 66, 194, 244, 278, 290
CviQI GTAC 2 cut(s) 97, 130
DdeI CTNAG 3 cut(s) 222, 303, 345
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 195, 273
Eco47I GGWCC 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 15, 281
EcoT14I CCWWGG 2 cut(s) 195, 273
ErhI CCWWGG 2 cut(s) 195, 273
FaeI CATG 3 cut(s) 103, 199, 336
FaiI YATR 7 cut(s) 9, 22, 101, 148, 197, 299, 334
FatI CATG 3 cut(s) 99, 195, 332
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 55, 240
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 3 cut(s) 103, 199, 336
HinfI GANTC 1 cut(s) 215
HphI GGTGA 2 cut(s) 65, 185
Hpy188I TCNGA 4 cut(s) 73, 164, 304, 340
HpyAV CCTTC 3 cut(s) 44, 258, 301
HpyCH4IV ACGT 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 287
HpyF3I CTNAG 3 cut(s) 222, 303, 345
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 3 cut(s) 103, 199, 336
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 6 cut(s) 2, 29, 104, 268, 295, 298
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 3 cut(s) 223, 256, 331
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 124, 212
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MluCI AATT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 8 cut(s) 35, 37, 53, 56, 217, 255, 280, 298
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 2 cut(s) 153, 168
MslI CAYNNNNRTG 1 cut(s) 73
MspR9I CCNGG 2 cut(s) 17, 283
MvaI CCWGG 2 cut(s) 17, 283
MwoI GCNNNNNNNGC 2 cut(s) 275, 287
NcoI CCATGG 1 cut(s) 195
NdeII GATC 1 cut(s) 140
NlaIII CATG 3 cut(s) 103, 199, 336
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 103
PciI ACATGT 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 129
PscI ACATGT 1 cut(s) 99
PshBI ATTAAT 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 15, 281
PspGI CCWGG 2 cut(s) 15, 281
PspPI GGNCC 2 cut(s) 65, 336
RsaI GTAC 2 cut(s) 98, 131
RsaNI GTAC 2 cut(s) 97, 130
RseI CAYNNNNRTG 1 cut(s) 73
SaqAI TTAA 2 cut(s) 153, 168
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 2 cut(s) 65, 336
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 2 cut(s) 17, 283
SetI ASST 4 cut(s) 27, 41, 55, 131
SfaNI GCATC 3 cut(s) 223, 256, 331
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 73
SnaBI TACGTA 1 cut(s) 129
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 15, 281
StyI CCWWGG 2 cut(s) 195, 273
TaiI ACGT 1 cut(s) 131
TasI AATT 1 cut(s) 165
TatI WGTACW 1 cut(s) 96
Tru1I TTAA 2 cut(s) 153, 168
Tru9I TTAA 2 cut(s) 153, 168
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 336
VspI ATTAAT 1 cut(s) 168
XceI RCATGY 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.