Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030456

Physical Location & Seq

Genomic Coordinates Forward (+)

57815322 .. 57816033

Gene Structure 712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGGACACTAGTCCTCCCGACCCCAAGAAACAAGTAATCAAGGACTTGGAAGAACAATTTGAGGACCCAATCCCTTTGAAGAAATTAAAAGTAGGCCAAATAGACAACGAATCTATTGAAAATAACCCTCTTCTCGAAGATTTTCAGTTCCCTCGTTTTGATGCTATTACTGCGGATCACATTCGCGATGGGATAACTATATTGTTGCAGAAGCTGGAAGAAGATTTTACTAAATTGGAGAATATGATAGAGCTTGAAGCAGAACCGACATGGTCTACAGTTGTGTTGCCATTTAAGAAGATTGTTGAACGGATGACTAAGCCTTGCGAGATTGTTGGTCTCCTTAAGAATCTTAAAGACTCTGAAGAGCTTCGTGATGCTCTTAAAAAAGTCTTGGTATCTTGTTTTTCTATTTTCTTATTATATCTATTGCATCCACTTCCTTCTTTTTTTTTTTTCCTCTTAAACTTCTATTTTCCTCAAAATCGTCTCGGCCGAATGAGGGCCGAGGAATTTGTGGTTGAATCGTCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M3

Protein Analysis

179

Amino Acids

20.9

Weight (kDa)

4.85

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP_N	PF19310	66 - 132	3.8e-12	Neurolysin/Thimet oligopeptidase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030456)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0233411
rosa_samantha	Rh7CG456000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	5, 176
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflII	CTTAAG	1 cut(s)	347
AgsI	TTSAA	5 cut(s)	82, 122, 260, 311, 527
AhlI	ACTAGT	1 cut(s)	11
AluBI	AGCT	3 cut(s)	217, 256, 373
AluI	AGCT	3 cut(s)	217, 256, 373
Alw26I	GTCTC	2 cut(s)	347, 497
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	3 cut(s)	97, 496, 507
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	2 cut(s)	144, 372
AspS9I	GGNCC	2 cut(s)	67, 507
AvaII	GGWCC	1 cut(s)	67
BccI	CCATC	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	347, 497
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 507
BmiI	GGNNCC	1 cut(s)	69
BmsI	GCATC	3 cut(s)	154, 370, 445
BoxI	GACNNNNGTC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	510
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	321, 436
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseX3I	CGGCCG	1 cut(s)	496
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	499
BshFI	GGCC	3 cut(s)	99, 498, 509
BsiEI	CGRYCG	1 cut(s)	499
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	2 cut(s)	347, 497
BsmBI	CGTCTC	1 cut(s)	497
BsnI	GGCC	3 cut(s)	99, 498, 509
Bso31I	GGTCTC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	178
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	2 cut(s)	5, 176
BspANI	GGCC	3 cut(s)	99, 498, 509
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	138, 363
BstAFI	CTTAAG	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	321, 436
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	2 cut(s)	347, 497
BstMBI	GATC	1 cut(s)	178
BstMCI	CGRYCG	1 cut(s)	499
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstPAI	GACNNNNGTC	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	189
BstZI	CGGCCG	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	99, 498, 509
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	321, 436
BtuMI	TCGCGA	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	67, 507
CviAII	CATG	1 cut(s)	273
CviJI	RGCY	7 cut(s)	99, 217, 256, 325, 373, 498, 509
CviKI_1	RGCY	7 cut(s)	99, 217, 256, 325, 373, 498, 509
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	496
EagI	CGGCCG	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	138, 363
EarI	CTCTTC	2 cut(s)	138, 363
EciI	GGCGGA	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	67
Eco52I	CGGCCG	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	67
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	1 cut(s)	276
FaiI	YATR	4 cut(s)	203, 248, 274, 427
FatI	CATG	1 cut(s)	272
FblI	GTMKAC	1 cut(s)	278
FokI	GGATG	2 cut(s)	328, 423
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	99, 498, 509
Hin1II	CATG	1 cut(s)	276
HinfI	GANTC	4 cut(s)	113, 352, 362, 527
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	4 cut(s)	20, 137, 188, 377
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	456
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	211, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	178
LguI	GCTCTTC	1 cut(s)	363
LpnPI	CCDG	1 cut(s)	203
LweI	GCATC	3 cut(s)	154, 370, 445
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	8 cut(s)	65, 94, 125, 152, 233, 236, 313, 380
MluCI	AATT	4 cut(s)	59, 86, 236, 515
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	27, 58, 141, 165, 473, 492, 498, 505
MroXI	GAANNNNTTC	2 cut(s)	144, 372
MseI	TTAA	6 cut(s)	89, 297, 348, 357, 387, 467
MspCI	CTTAAG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	276
NlaIV	GGNNCC	1 cut(s)	69
NmeAIII	GCCGAG	2 cut(s)	474, 535
NruI	TCGCGA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	144, 372
PfeI	GAWTC	3 cut(s)	113, 352, 527
PflFI	GACNNNGTC	1 cut(s)	274
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	67
PshAI	GACNNNNGTC	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	67, 507
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	217
PsyI	GACNNNGTC	1 cut(s)	274
RruI	TCGCGA	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	6 cut(s)	89, 297, 348, 357, 387, 467
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	67, 507
SchI	GAGTC	1 cut(s)	356
SetI	ASST	3 cut(s)	219, 258, 375
SfaNI	GCATC	3 cut(s)	154, 370, 445
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	4 cut(s)	59, 86, 236, 515
SsiI	CCGC	2 cut(s)	5, 176
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	59, 86, 236, 515
TfiI	GAWTC	3 cut(s)	113, 352, 527
Tru1I	TTAA	6 cut(s)	89, 297, 348, 357, 387, 467
Tru9I	TTAA	6 cut(s)	89, 297, 348, 357, 387, 467
TspGWI	ACGGA	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	274
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	515
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	2 cut(s)	144, 372
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.