Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

57955636 .. 57956124

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGATTACCGATTTGCTAACTGATTTGAACCCCATCAATGCTATTGTCGACGCTGATGTCAATAGTGCTCCACATGAAGATGCAGCATGTATTGGCTCTGCTGGTGCTACCTATCTTCTTACAACTAGTACTCGCGAGTTTGCTTTTAGAAACATCAAAACTATTGCCGAATGTTTGGCTGATGAACTTATTAATGCTGCCAAAGGTTCTTCTAACAGTCAATCAGTTATGCTATTAAAAAGAAGGATGAGATTGAAAGAGTCGGCAAGGTCAAACGTGGAGGCGTTGATCGAAGAGCACTTTATTTCAACAAGGTGGGCTGCATGCATGACTGCTTGTGTTTATTTTACAATAATTTATCTATTTAACTTTGAATACGAGAGATATTTCTTCTTTCTCTTTTGTAGTCATGAAGATGAGTCGGGAATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

145

Amino Acids

16.36

Weight (kDa)

4.79

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	31, 259, 312, 377
AhlI	ACTAGT	1 cut(s)	128
Alw21I	GWGCWC	2 cut(s)	73, 303
ApeKI	GCWGC	3 cut(s)	86, 200, 323
AseI	ATTAAT	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	73, 303
BbvI	GCAGC	3 cut(s)	98, 187, 310
BccI	CCATC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	3 cut(s)	87, 201, 324
BlsI	GCNGC	3 cut(s)	88, 202, 325
BmcAI	AGTACT	1 cut(s)	133
BmsI	GCATC	1 cut(s)	73
BseGI	GGATG	1 cut(s)	255
BseXI	GCAGC	3 cut(s)	98, 187, 310
Bsh1236I	CGCG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	73, 303
Bsp1286I	GDGCHC	2 cut(s)	73, 303
Bsp143I	GATC	1 cut(s)	291
Bsp68I	TCGCGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	291
BssMI	GATC	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	328
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	93, 330
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	98, 187, 310
BtsCI	GGATG	1 cut(s)	255
BtuMI	TCGCGA	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	412
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	5 cut(s)	77, 90, 327, 331, 413
CviJI	RGCY	3 cut(s)	99, 182, 323
CviKI_1	RGCY	3 cut(s)	99, 182, 323
CviQI	GTAC	1 cut(s)	132
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	332
FaeI	CATG	5 cut(s)	80, 93, 330, 334, 416
FaiI	YATR	6 cut(s)	78, 91, 233, 328, 332, 414
FatI	CATG	5 cut(s)	76, 89, 326, 330, 412
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	87, 201, 324
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	87, 201, 324
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	3 cut(s)	87, 201, 324
HgaI	GACGC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	80, 93, 330, 334, 416
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	2 cut(s)	263, 422
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	3 cut(s)	137, 413, 426
Hpy8I	GTNNAC	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	86, 326, 330
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	80, 93, 330, 334, 416
Kzo9I	GATC	1 cut(s)	291
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	90
Lsp1109I	GCAGC	3 cut(s)	98, 187, 310
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	279
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	6 cut(s)	92, 110, 204, 308, 385, 428
MhlI	GDGCHC	2 cut(s)	73, 303
MluCI	AATT	2 cut(s)	357, 433
MlyI	GAGTC	2 cut(s)	272, 431
MnlI	CCTC	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	3 cut(s)	195, 239, 369
MslI	CAYNNNNRTG	2 cut(s)	81, 417
MvnI	CGCG	1 cut(s)	138
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	5 cut(s)	80, 93, 330, 334, 416
NruI	TCGCGA	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	2 cut(s)	93, 330
PaeI	GCATGC	1 cut(s)	330
PagI	TCATGA	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	291
PkrI	GCNGC	3 cut(s)	88, 202, 325
PleI	GAGTC	2 cut(s)	271, 430
PpsI	GAGTC	2 cut(s)	271, 430
PshBI	ATTAAT	1 cut(s)	195
RruI	TCGCGA	1 cut(s)	138
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	2 cut(s)	81, 417
SalI	GTCGAC	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	3 cut(s)	195, 239, 369
SatI	GCNGC	3 cut(s)	87, 201, 324
Sau3AI	GATC	1 cut(s)	291
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	272, 431
SduI	GDGCHC	2 cut(s)	73, 303
SetI	ASST	5 cut(s)	116, 211, 275, 282, 320
SfaNI	GCATC	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	81, 417
SpeI	ACTAGT	1 cut(s)	128
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	357, 433
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	51, 294
TasI	AATT	2 cut(s)	357, 433
TatI	WGTACW	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	195, 239, 369
Tru9I	TTAA	3 cut(s)	195, 239, 369
TseI	GCWGC	3 cut(s)	86, 200, 323
TspDTI	ATGAA	3 cut(s)	93, 201, 429
VspI	ATTAAT	1 cut(s)	195
XceI	RCATGY	2 cut(s)	93, 330
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.