Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

60214231 .. 60214482

Gene Structure 252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTATGGTGGTTGGACAAGCAAGCAACAGTCACCACGGCCCATTCCCTCTTTATTCTCGAAACCTCGTTCCCACCGTCAGTCGGAGCATTCCACCGCGATCTGAAGAACTGCATATCTCTGATCCTCGATTTCCACACTAAAATCGGATCTCCTATCCTGATCAACGCCTACCCTTACTTCGCCTACAAATCGAACCCCAAACAAGTGTCGTTGGATACCTTCTCTTCCAGGCCGACGTCGGTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

83

Amino Acids

9.36

Weight (kDa)

8.69

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	6 - 73	2.3e-09	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	242
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	2 cut(s)	118, 157
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	230
AlwI	GGATC	2 cut(s)	118, 157
AoxI	GGCC	2 cut(s)	39, 233
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	162
BfaI	CTAG	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	41, 235
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	41, 235
Bsp143I	GATC	4 cut(s)	100, 123, 149, 162
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	41, 235
BspFNI	CGCG	1 cut(s)	99
BspPI	GGATC	2 cut(s)	118, 157
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	4 cut(s)	100, 123, 149, 162
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	31, 78
Bst6I	CTCTTC	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	4 cut(s)	103, 126, 152, 165
BstMBI	GATC	4 cut(s)	100, 123, 149, 162
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	41, 235
BtgI	CCRYGG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	40
CviJI	RGCY	2 cut(s)	41, 235
CviKI_1	RGCY	2 cut(s)	41, 235
DpnI	GATC	4 cut(s)	102, 125, 151, 164
DpnII	GATC	4 cut(s)	100, 123, 149, 162
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	230
FaiI	YATR	2 cut(s)	7, 116
FbaI	TGATCA	1 cut(s)	162
FspBI	CTAG	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	41, 235
Hin1I	GRCGYC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	86, 105, 123, 149
Hpy188III	TCNNGA	2 cut(s)	59, 160
Hpy99I	CGWCG	2 cut(s)	241, 244
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	31, 78
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	239
Hsp92I	GRCGYC	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	100, 123, 149, 162
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	3 cut(s)	173, 217, 244
MaeI	CTAG	1 cut(s)	250
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	102, 125, 151, 164
MboI	GATC	4 cut(s)	100, 123, 149, 162
MboII	GAAGA	2 cut(s)	118, 219
MflI	RGATCY	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	64, 195
MnlI	CCTC	3 cut(s)	59, 76, 137
MspR9I	CCNGG	1 cut(s)	232
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	99
NdeII	GATC	4 cut(s)	100, 123, 149, 162
NmuCI	GTSAC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PctI	GAATGC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	149
Sau3AI	GATC	4 cut(s)	100, 123, 149, 162
Sau96I	GGNCC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	232
SetI	ASST	3 cut(s)	68, 224, 242
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	31, 78
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	60, 129, 194
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	250
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.