RchiOBHm_Chr7g0236291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
61137526 .. 61137864
339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 339 bp
ATGTCCAAACTACCCCTATTACAAATTTTTTTACTTCTTCAAATTTTTTTTCTTTTTTTACTTCGCGTCCGCTGCCCCCGGCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCATACTCTTCCTCCCGATTCATAACCCTTTACTCCCAATCCAACCTCCCCTTCCACTATGACCAAACCGATCCGGTGGCTGCCGACTCATCCCCCACCGTCGATCCCCTTCTGCGGAAGCTCGAGGACGCCATCCACCGGATCATCATGCACAAGTCCGCACCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

8.98

Isoelectric Point (pI)

71.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 66
AciI CCGC 3 cut(s) 70, 283, 327
AclWI GGATC 3 cut(s) 233, 266, 317
AcsI RAATTY 2 cut(s) 24, 42
AcyI GRCGYC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 282, 306
AgsI TTSAA 1 cut(s) 41
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
AlwI GGATC 3 cut(s) 233, 266, 317
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 72, 248
ApoI RAATTY 2 cut(s) 24, 42
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 290
BbvI GCAGC 2 cut(s) 59, 235
BccI CCATC 1 cut(s) 308
BcnI CCSGG 1 cut(s) 79
BisI GCNGC 2 cut(s) 73, 249
BlsI GCNGC 2 cut(s) 74, 250
Bme1390I CCNGG 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 77
BsaWI WCCGGW 2 cut(s) 241, 306
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 306
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 2 cut(s) 257, 300
BseLI CCNNNNNNNGG 2 cut(s) 282, 306
BseXI GCAGC 2 cut(s) 59, 235
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 79, 242, 307
BslI CCNNNNNNNGG 2 cut(s) 282, 306
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 290
Bsp143I GATC 3 cut(s) 238, 271, 309
BspACI CCGC 3 cut(s) 70, 283, 327
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 3 cut(s) 233, 266, 317
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 3 cut(s) 238, 271, 309
BssNI GRCGYC 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 297
BstF5I GGATG 2 cut(s) 257, 300
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 3 cut(s) 241, 274, 312
BstMBI GATC 3 cut(s) 238, 271, 309
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 77
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 59, 235
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 257, 300
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 2 cut(s) 55, 305
CviAII CATG 1 cut(s) 316
CviJI RGCY 3 cut(s) 82, 248, 289
CviKI_1 RGCY 3 cut(s) 82, 248, 289
DpnI GATC 3 cut(s) 240, 273, 311
DpnII GATC 3 cut(s) 238, 271, 309
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 290
FaeI CATG 1 cut(s) 319
FaiI YATR 4 cut(s) 172, 191, 228, 317
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 73, 249
FokI GGATG 2 cut(s) 244, 287
Fsp4HI GCNGC 2 cut(s) 73, 249
GluI GCNGC 2 cut(s) 73, 249
HaeIII GGCC 1 cut(s) 82
HapII CCGG 3 cut(s) 79, 242, 307
HgaI GACGC 2 cut(s) 55, 305
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 1 cut(s) 319
HinfI GANTC 2 cut(s) 186, 254
HpaII CCGG 3 cut(s) 79, 242, 307
HphI GGTGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 183
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 2 cut(s) 229, 287
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 3 cut(s) 238, 271, 309
LpnPI CCDG 3 cut(s) 92, 255, 320
Lsp1109I GCAGC 2 cut(s) 59, 235
MalI GATC 3 cut(s) 240, 273, 311
MboI GATC 3 cut(s) 238, 271, 309
MboII GAAGA 2 cut(s) 29, 168
MluCI AATT 2 cut(s) 24, 42
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 4 cut(s) 97, 190, 224, 286
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 3 cut(s) 79, 242, 307
MspR9I CCNGG 1 cut(s) 79
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 79
NdeII GATC 3 cut(s) 238, 271, 309
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 290
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 74, 250
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 81
PspXI VCTCGAGB 1 cut(s) 290
SatI GCNGC 2 cut(s) 73, 249
Sau3AI GATC 3 cut(s) 238, 271, 309
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 79
SetI ASST 2 cut(s) 216, 291
Sfr274I CTCGAG 1 cut(s) 290
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 2 cut(s) 24, 42
SsiI CCGC 3 cut(s) 70, 283, 327
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 270, 291
TasI AATT 2 cut(s) 24, 42
TfiI GAWTC 1 cut(s) 186
TseI GCWGC 2 cut(s) 72, 248
TspDTI ATGAA 1 cut(s) 178
XapI RAATTY 2 cut(s) 24, 42
XhoI CTCGAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.