Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

61264714 .. 61265322

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCAGGATGTTCAAGAGATTGCTCAACAGAGGCAGAGGCCTATAAGGAGGAGAAAGAGAAAAACACCTGAAACTTCTTCACTGAAAGACTTCTTCACTGAAACTTCTGGTCATAATGCTCATGGTATTCAGGCTCTGATGCAGGCAATGGAACTTGAGCTTGAAGTCACAGTTAAGACTCATGAAGTAAGATCTGAGTATGAGCGGCAAATTGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

73

Amino Acids

8.68

Weight (kDa)

6.3

Isoelectric Point (pI)

67.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	14, 164, 215
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	89
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
BmsI	GCATC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	187
BspHI	TCATGA	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	153
BssMI	GATC	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	80, 96
Cac8I	GCNNGC	1 cut(s)	144
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	181
CviAII	CATG	2 cut(s)	122, 182
CviJI	RGCY	3 cut(s)	40, 134, 160
CviKI_1	RGCY	3 cut(s)	40, 134, 160
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	40
FaeI	CATG	2 cut(s)	125, 185
FaiI	YATR	5 cut(s)	44, 114, 123, 183, 201
FatI	CATG	2 cut(s)	121, 181
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	125, 185
HinfI	GANTC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	138, 196
Hpy188III	TCNNGA	2 cut(s)	14, 182
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	4, 142
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	125, 185
Kzo9I	GATC	1 cut(s)	191
LpnPI	CCDG	4 cut(s)	81, 93, 116, 128
LweI	GCATC	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	193
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	191
MboII	GAAGA	2 cut(s)	69, 85
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	3 cut(s)	24, 30, 42
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	174
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	125, 185
NmuCI	GTSAC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	172
SetI	ASST	2 cut(s)	70, 162
SfaNI	GCATC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	210
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	172
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	87, 103
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	87, 103
XmnI	GAANNNNTTC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.