RchiOBHm_Chr7g0239971
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
65771748 .. 65774668
2921 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGTCTGGAAGACATTTTGTTTATATGGAGGAATGGTGGGCCACGGAACAATGTCCGTCTTATTCACGCTGAGGGCTAACTTTCAGACAACAAGTAACAATATAATCTTTGGGAATAGATGGAGACATCTTTTAGGAGAAAGAGACTTTTGGGAACATGTGGGAGGAATGAGGAGTGTCGAGTTCAAGGTTATTGAGACTGGTCCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

8.05

Weight (kDa)

9.18

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 1 cut(s) 187
Alw26I GTCTC 3 cut(s) 118, 138, 191
AoxI GGCC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 40, 203
AvaII GGWCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 17
BbvCI CCTCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 118, 138, 191
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 40, 203
BpiI GAAGAC 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 187
BshFI GGCC 1 cut(s) 42
BsmAI GTCTC 3 cut(s) 118, 138, 191
BsnI GGCC 1 cut(s) 42
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 43
BstMAI GTCTC 3 cut(s) 118, 138, 191
BstNSI RCATGY 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 40, 203
CviAII CATG 1 cut(s) 158
CviJI RGCY 2 cut(s) 42, 77
CviKI_1 RGCY 2 cut(s) 42, 77
DdeI CTNAG 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 203
FaeI CATG 1 cut(s) 161
FaiI YATR 4 cut(s) 25, 27, 104, 159
FatI CATG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 1 cut(s) 161
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 7, 210
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 1 cut(s) 161
LpnPI CCDG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 95
MboII GAAGA 1 cut(s) 22
MnlI CCTC 4 cut(s) 23, 66, 158, 165
NlaIII CATG 1 cut(s) 161
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PscI ACATGT 1 cut(s) 157
PspPI GGNCC 2 cut(s) 40, 203
Sau96I GGNCC 2 cut(s) 40, 203
SetI ASST 1 cut(s) 192
SgeI CNNG 7 cut(s) 19, 56, 79, 105, 170, 193, 199
SinI GGWCC 1 cut(s) 203
TaqI TCGA 1 cut(s) 180
TspGWI ACGGA 2 cut(s) 46, 60
VpaK11BI GGWCC 1 cut(s) 203
XceI RCATGY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.