RchiOBHm_Chr7g0242251

Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
68399938 .. 68400777
840 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 252 bp
ATGGGCGTTGGTTATCCATTGGACATTGTAGTTTGCAGTGCTTTAGGTGCTGACATGTATGACTGTGTTTATCCAACACGTACTGCTCGCTTTGGCACAGCTCTTATACCTGAGGGAGTGCTGAAGCTGAAGCACAAAGCTATGGCTGAGGATATCCGCCCTATCGATCCTACAAGTGCTTGTATGGTATGCAAGAATTATACTAGAGCTTACATTCATTGCCTAGTTACAAAAGATGCTATGGGATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.03

Weight (kDa)

7.62

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TGT PF01702 1 - 80 3e-31 Queuine tRNA-ribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 143, 149
AfaI GTAC 1 cut(s) 82
AflIII ACRYGT 2 cut(s) 54, 77
AluBI AGCT 4 cut(s) 101, 127, 140, 209
AluI AGCT 4 cut(s) 101, 127, 140, 209
AlwI GGATC 1 cut(s) 161
AxyI CCTNAGG 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 147
BfaI CTAG 2 cut(s) 204, 224
BmsI GCATC 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 165
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 102, 138
BshVI ATCGAT 1 cut(s) 165
Bsp143I GATC 2 cut(s) 166, 245
BspACI CCGC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 103, 139
BspDI ATCGAT 1 cut(s) 165
BspPI GGATC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 217
BssMI GATC 2 cut(s) 166, 245
Bst4CI ACNGT 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 111, 147, 249
BstKTI GATC 2 cut(s) 169, 248
BstMBI GATC 2 cut(s) 166, 245
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 88
ClaI ATCGAT 1 cut(s) 165
Csp6I GTAC 1 cut(s) 81
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 101, 127, 140, 146, 209
CviKI_1 RGCY 5 cut(s) 101, 127, 140, 146, 209
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 3 cut(s) 111, 147, 249
DpnI GATC 2 cut(s) 168, 247
DpnII GATC 2 cut(s) 166, 245
EciI GGCGGA 1 cut(s) 146
Eco32I GATATC 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 143, 149
Eco81I CCTNAGG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 154
FaeI CATG 1 cut(s) 58
FaiI YATR 8 cut(s) 56, 60, 107, 143, 185, 190, 201, 242
FatI CATG 1 cut(s) 54
FspBI CTAG 2 cut(s) 204, 224
Hin1II CATG 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 36, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 3 cut(s) 111, 147, 249
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 166, 245
LpnPI CCDG 1 cut(s) 123
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 204, 224
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 226
MalI GATC 2 cut(s) 168, 247
MboI GATC 2 cut(s) 166, 245
MflI RGATCY 1 cut(s) 245
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 2 cut(s) 106, 142
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 166, 245
NlaIII CATG 1 cut(s) 58
NspI RCATGY 1 cut(s) 58
PciI ACATGT 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 80
PscI ACATGT 1 cut(s) 54
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 166, 245
SetI ASST 7 cut(s) 49, 82, 103, 112, 129, 142, 211
SfaNI GCATC 1 cut(s) 226
SgeI CNNG 9 cut(s) 67, 90, 99, 122, 186, 192, 205, 216, 236
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 157
SspMI CTAG 2 cut(s) 204, 224
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 196
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 43
XceI RCATGY 1 cut(s) 58
XspI CTAG 2 cut(s) 204, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.