RchiOBHm_Chr7g0242431

Belongs to the peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Forward (+)
68528160 .. 68532631
4472 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGAATGACAAAATTTGCGTGAAGGACGATCCCCTGCTTATTGTTCTATTGGCACAAAGTGCCATTAAGCAAACCTTTCTAGCTTCTGCAATTCGCAAATGTGGAGGAAACGTTGAGAAGGGCAATTTGTTATACACTGCATATGGTTCAAATGGTCAGGAATTTTGGAAGGGCAGATACCCAAGAGAGGGAAGGGTTTCCCAGTGGGACAAAGCAAGTGTTCAAGAAATGAAAGACAAGTTTTCTGCCGTTGGCTTTGGCCCCCTCCAGCTAGCTGTTATGTCTGCATTCTTGGGTCCTGAATAG

Protein Analysis

101

Amino Acids

11.13

Weight (kDa)

8.98

Isoelectric Point (pI)

20.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 111
AclWI GGATC 1 cut(s) 23
AcsI RAATTY 2 cut(s) 12, 161
AdeI CACNNNGTG 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 187, 188
AgsI TTSAA 2 cut(s) 150, 224
AluBI AGCT 3 cut(s) 83, 271, 275
AluI AGCT 3 cut(s) 83, 271, 275
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 259
ApoI RAATTY 2 cut(s) 12, 161
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 260, 296
AsuNHI GCTAGC 1 cut(s) 271
AvaII GGWCC 1 cut(s) 296
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BceAI ACGGC 1 cut(s) 233
BfaI CTAG 2 cut(s) 80, 272
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 260, 296
BmiI GGNNCC 2 cut(s) 262, 297
BmrI ACTGGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 188
Bse1I ACTGG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 187, 188
BseNI ACTGG 1 cut(s) 202
BshFI GGCC 1 cut(s) 261
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 187, 188
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 2 cut(s) 262, 297
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 202
BssMI GATC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 209
Cac8I GCNNGC 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 260, 296
CviJI RGCY 5 cut(s) 83, 255, 261, 271, 275
CviKI_1 RGCY 5 cut(s) 83, 255, 261, 271, 275
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
DraIII CACNNNGTG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 296
FaiI YATR 4 cut(s) 133, 142, 144, 281
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 1 cut(s) 221
FauNDI CATATG 1 cut(s) 142
FspBI CTAG 2 cut(s) 80, 272
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 261
Hpy188III TCNNGA 3 cut(s) 158, 224, 299
HpyAV CCTTC 4 cut(s) 16, 112, 163, 186
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 89, 140, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 111
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 47, 143, 215, 281
MaeI CTAG 2 cut(s) 80, 272
MaeII ACGT 1 cut(s) 111
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MluCI AATT 4 cut(s) 12, 90, 124, 161
MnlI CCTC 3 cut(s) 98, 181, 275
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 1 cut(s) 66
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeI CATATG 1 cut(s) 142
NdeII GATC 1 cut(s) 28
NheI GCTAGC 1 cut(s) 271
NlaIV GGNNCC 2 cut(s) 262, 297
PctI GAATGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 296
Psp1406I AACGTT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 262, 297
PspPI GGNCC 2 cut(s) 260, 296
PspPPI RGGWCCY 1 cut(s) 296
SaqAI TTAA 1 cut(s) 66
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 2 cut(s) 260, 296
SetI ASST 5 cut(s) 77, 85, 114, 273, 277
SinI GGWCC 1 cut(s) 296
Sse9I AATT 4 cut(s) 12, 90, 124, 161
SspMI CTAG 2 cut(s) 80, 272
TaiI ACGT 1 cut(s) 114
TasI AATT 4 cut(s) 12, 90, 124, 161
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 142, 209
TspDTI ATGAA 2 cut(s) 17, 245
TspRI CASTG 2 cut(s) 142, 209
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 2 cut(s) 12, 161
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 2 cut(s) 80, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.