Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

68647048 .. 68647719

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCTTGGGTTATTGGAAATCAGATTTATGGTATGTGTTCCTATGTGCCTTTTAAGAAAAGGGTTGCTGTTAATTGACGGAAGAGCTTTGGTTTGTCTTTGGTTTTTCGTCTCAGGAACATTTGTTGAAATGGCTGAGGCTGCTGATTTGATACAACGAAGGCAGCGTTCTGACTTTCAATGTAAGTTTTTAGAATGGTTTTATTCTCAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009543 GO:0009579 GO:0009636 GO:0009987 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0031976 GO:0031977 GO:0031978 GO:0031984 GO:0033554 GO:0034357 GO:0034599 GO:0042221 GO:0042651 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055035 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

71

Amino Acids

8.36

Weight (kDa)

7.6

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	128, 179
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	140, 163
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	127, 175
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	214
BisI	GCNGC	2 cut(s)	141, 164
BlsI	GCNGC	2 cut(s)	142, 165
Bpu10I	CCTNAGC	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	126, 126
BseXI	GCAGC	2 cut(s)	127, 175
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	125, 127
BspQI	GCTCTTC	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	112, 135
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	127, 175
CviJI	RGCY	3 cut(s)	86, 134, 140
CviKI_1	RGCY	3 cut(s)	86, 134, 140
DdeI	CTNAG	2 cut(s)	112, 135
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	115
FaiI	YATR	3 cut(s)	29, 34, 44
Fnu4HI	GCNGC	2 cut(s)	141, 164
Fsp4HI	GCNGC	2 cut(s)	141, 164
FspBI	CTAG	1 cut(s)	214
GluI	GCNGC	2 cut(s)	141, 164
Hpy188I	TCNGA	2 cut(s)	23, 172
Hpy188III	TCNNGA	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	112, 135
LguI	GCTCTTC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	99
Lsp1109I	GCAGC	2 cut(s)	127, 175
MaeI	CTAG	1 cut(s)	214
MboII	GAAGA	1 cut(s)	93
MluCI	AATT	1 cut(s)	72
MnlI	CCTC	1 cut(s)	130
MseI	TTAA	2 cut(s)	53, 71
MwoI	GCNNNNNNNGC	1 cut(s)	140
PciSI	GCTCTTC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	142, 165
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	53, 71
SatI	GCNGC	2 cut(s)	141, 164
SetI	ASST	1 cut(s)	88
SgeI	CNNG	2 cut(s)	17, 126
Sse9I	AATT	1 cut(s)	72
SspMI	CTAG	1 cut(s)	214
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	53, 71
Tru9I	TTAA	2 cut(s)	53, 71
TseI	GCWGC	2 cut(s)	140, 163
TspGWI	ACGGA	1 cut(s)	93
XspI	CTAG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.