Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

69224957 .. 69225832

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCGCAGTGTAGTAGTAAGGGCTGTAGATGGAGATGGAGAAATCGCTCTTCATGTAGCAGCCAAGGAAGGGCATGTGCACATCGTGAAAGAGTTGGTGCATTTGATGACACAAGAAGATTTGAAAACGAAAACCACTCTTGGTCACACAGCTCTTCACGTAGCAGCGTGGATGGGGCACGTGCAAATTGTGAAAGAGTTACCGGTGCCGTTGATGGGAGAAGTAAAAGACAAGGATGGTGACACAGCTCTTCATATAGCAGTCCAGGAAGGGAAGGCCAATATTGTTAAAGAGTTGGTGCTGTTGATGAGACAAGACGACTTGAAAATAAAAAATGATGCTGGTTACACAGCTCTTCACCTAGCAGTCAACAAGGGGAATGTGCCTATGGTCAAAGAGTTCCTGAGAAAAGAAAAAGATGACCATGTGAATCATGCTTTGCAAACTTTGTCTGTATTGGGCTGTGTGCCTTGTACTATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04024 ko04062 ko04064 ko04210 ko04380 ko04620 ko04621 ko04622 ko04623 ko04624 ko04657 ko04658 ko04659 ko04660 ko04662 ko04668 ko04722 ko04920 ko04926 ko04931 ko05120 ko05131 ko05134 ko05140 ko05142 ko05145 ko05160 ko05161 ko05162 ko05164 ko05166 ko05167 ko05168 ko05169 ko05200 ko05203 ko05215 ko05220 ko05222 map04024 map04062 map04064 map04210 map04380 map04620 map04621 map04622 map04623 map04624 map04657 map04658 map04659 map04660 map04662 map04668 map04722 map04920 map04926 map04931 map05120 map05131 map05134 map05140 map05142 map05145 map05160 map05161 map05162 map05164 map05166 map05167 map05168 map05169 map05200 map05203 map05215 map05220 map05222

Pfam Domains

Protein Families

Ank_2

Protein Analysis

161

Amino Acids

17.65

Weight (kDa)

6.59

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	9 - 67	5.1e-11	Ankyrin repeats (3 copies)
Ank_2	PF12796	75 - 140	7.9e-12	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	205
AcvI	CACGTG	1 cut(s)	181
AdeI	CACNNNGTG	1 cut(s)	85
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	69, 215
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	124, 325
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	3 cut(s)	152, 248, 353
AluI	AGCT	3 cut(s)	152, 248, 353
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	276
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	59, 164
AsiGI	ACCGGT	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	251, 350
BaeGI	GKGCMC	2 cut(s)	81, 180
BanI	GGYRCC	1 cut(s)	205
BbrPI	CACGTG	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	71, 176
BccI	CCATC	5 cut(s)	23, 29, 166, 208, 230
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	60, 165
BlsI	GCNGC	2 cut(s)	61, 166
Bme1390I	CCNGG	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	1 cut(s)	328
BsaAI	YACGTR	2 cut(s)	160, 181
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 215
Bse118I	RCCGGY	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	177, 241
BseLI	CCNNNNNNNGG	2 cut(s)	69, 215
BseMII	CTCAG	1 cut(s)	395
BseSI	GKGCMC	2 cut(s)	81, 180
BseXI	GCAGC	2 cut(s)	71, 176
BshFI	GGCC	1 cut(s)	278
BshNI	GGYRCC	1 cut(s)	205
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	69, 215
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	81, 180
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	207
BspQI	GCTCTTC	4 cut(s)	54, 159, 255, 360
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	4 cut(s)	54, 159, 255, 360
BstBAI	YACGTR	2 cut(s)	160, 181
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	177, 241
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	81, 180
BstV1I	GCAGC	2 cut(s)	71, 176
BsuRI	GGCC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	177, 241
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	474
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	4 cut(s)	53, 74, 425, 434
CviJI	RGCY	7 cut(s)	23, 62, 152, 248, 278, 353, 462
CviKI_1	RGCY	7 cut(s)	23, 62, 152, 248, 278, 353, 462
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	1 cut(s)	404
DraIII	CACNNNGTG	1 cut(s)	85
Eam1104I	CTCTTC	4 cut(s)	54, 159, 255, 360
EarI	CTCTTC	4 cut(s)	54, 159, 255, 360
Eco130I	CCWWGG	1 cut(s)	63
Eco72I	CACGTG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	56, 77, 428, 437
FaiI	YATR	7 cut(s)	54, 75, 255, 257, 389, 426, 435
FatI	CATG	4 cut(s)	52, 73, 424, 433
Fnu4HI	GCNGC	2 cut(s)	60, 165
FokI	GGATG	2 cut(s)	184, 248
Fsp4HI	GCNGC	2 cut(s)	60, 165
FspBI	CTAG	1 cut(s)	362
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	60, 165
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	56, 77, 428, 437
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	251, 350
Hpy166II	GTNNAC	2 cut(s)	79, 370
Hpy188III	TCNNGA	2 cut(s)	85, 403
Hpy8I	GTNNAC	2 cut(s)	79, 370
HpyAV	CCTTC	3 cut(s)	62, 263, 268
HpyCH4IV	ACGT	2 cut(s)	159, 180
HpyCH4V	TGCA	4 cut(s)	79, 100, 184, 442
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	2 cut(s)	159, 180
Hsp92II	CATG	4 cut(s)	56, 77, 428, 437
HspAI	GCGC	1 cut(s)	4
LguI	GCTCTTC	4 cut(s)	54, 159, 255, 360
LpnPI	CCDG	5 cut(s)	216, 251, 278, 327, 416
Lsp1109I	GCAGC	2 cut(s)	71, 176
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	159, 180
MaeIII	GTNAC	4 cut(s)	143, 198, 239, 344
MboII	GAAGA	5 cut(s)	41, 128, 146, 242, 347
MhlI	GDGCHC	2 cut(s)	81, 180
MluCI	AATT	1 cut(s)	186
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
NlaIII	CATG	4 cut(s)	56, 77, 428, 437
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	143, 239
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	77
PciSI	GCTCTTC	4 cut(s)	54, 159, 255, 360
PfeI	GAWTC	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	264
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	61, 166
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
Ppu21I	YACGTR	2 cut(s)	160, 181
Psp6I	CCWGG	1 cut(s)	264
PspCI	CACGTG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	207
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SapI	GCTCTTC	4 cut(s)	54, 159, 255, 360
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	60, 165
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	81, 180
SetI	ASST	6 cut(s)	154, 162, 183, 250, 355, 363
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	186
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	2 cut(s)	162, 183
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	143, 239
TseI	GCWGC	2 cut(s)	59, 164
Tsp45I	GTSAC	2 cut(s)	143, 239
TspDTI	ATGAA	2 cut(s)	41, 242
TspRI	CASTG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	77
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.