RchiOBHm_Chr7g0242991

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
69281462 .. 69282241
780 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 201 bp
ATGCCATGTAAGTGCTACTGTATTCTACATGAAGAGAATGTCCTGGGAGCAATTTTTAGTATCTGGGACGAACTCAAGATGGCGAAATCATGGGAAGAAGTTGAACAGGTTGTATGGGGCGAGCTAAATAACTACAAAGGCTTTCCTGGATCATCCACATCTCTCTCTTTGTTGGAGCCGAAAACTCCCTCAACATTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.48

Weight (kDa)

4.72

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 2 cut(s) 42, 145
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 1 cut(s) 157
BccI CCATC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 44, 147
Bme1390I CCNGG 2 cut(s) 44, 147
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 44, 147
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 44, 147
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 149
Bst2UI CCWGG 2 cut(s) 44, 147
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 122
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstNI CCWGG 2 cut(s) 44, 147
BstSCI CCNGG 2 cut(s) 42, 145
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 122
CviAII CATG 3 cut(s) 6, 29, 90
CviJI RGCY 3 cut(s) 124, 141, 178
CviKI_1 RGCY 3 cut(s) 124, 141, 178
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 42, 145
FaeI CATG 3 cut(s) 9, 32, 93
FaiI YATR 4 cut(s) 7, 30, 91, 115
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 5, 28, 89
FokI GGATG 1 cut(s) 139
Hin1II CATG 3 cut(s) 9, 32, 93
Hpy188III TCNNGA 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 20
Hsp92II CATG 3 cut(s) 9, 32, 93
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 47, 175
LpnPI CCDG 6 cut(s) 29, 49, 56, 92, 132, 159
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 2 cut(s) 44, 107
MluCI AATT 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 199
MslI CAYNNNNRTG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 44, 147
MvaI CCWGG 2 cut(s) 44, 147
NdeII GATC 1 cut(s) 149
NlaIII CATG 3 cut(s) 9, 32, 93
NlaIV GGNNCC 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 42, 145
PspGI CCWGG 2 cut(s) 42, 145
PspN4I GGNNCC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 10
Sau3AI GATC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 44, 147
SetI ASST 2 cut(s) 111, 126
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 42, 145
TaaI ACNGT 1 cut(s) 20
TasI AATT 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.