RchiOBHm_Chr7g0243161

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
N/A
Physical Location & Seq
Reverse (-)
69459862 .. 69460410
549 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGTCGCACGTGGCAATCGCCGATTCCGTCAAGTCTCCAAAACCACAGAGCCCGCCTTTCTTAACCGCCGTTTGCCACAGTCAGTATTCCTCGTCTCCCTTTCACTCAAACTCCCGCAGCTTCTCTCTATCAACTTCAATCTTCCGATGGAGGTTTCGGAAGCCCCTCCCTTCCGGCCAAGAGATCGCCGCCCGGACGCCCTCGGAAACTTCCCTAGTCCTCTCCAACAAGCTCATCTGTACCCTCTTGGAATCGTTCTCTCCTCGCGACGTTGCTCGCCTCTCCTGCTTTAGCAGTGTGATGTATATACTTGGCAATGATGAGCCACTCTGGTTGGGTTTATGCCTCAACACATCGTGGAAGAAGACGGTGCTGCATTTGTATGTCTCAGACTTTAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

134

Amino Acids

15.01

Weight (kDa)

9.42

Isoelectric Point (pI)

72.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 4 cut(s) 53, 66, 115, 189
AcoI YGGCCR 1 cut(s) 175
AcvI CACGTG 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 357
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 3 cut(s) 120, 232, 400
AluI AGCT 3 cut(s) 120, 232, 400
Alw26I GTCTC 3 cut(s) 39, 99, 391
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 117, 373
AsuC2I CCSGG 1 cut(s) 193
BanII GRGCYC 1 cut(s) 53
BbrPI CACGTG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 129, 360
BccI CCATC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 3 cut(s) 39, 99, 391
BfaI CTAG 1 cut(s) 215
BisI GCNGC 3 cut(s) 118, 189, 374
BlsI GCNGC 3 cut(s) 119, 190, 375
Bme1390I CCNGG 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 10
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 129, 360
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 177
BsiSI CCGG 2 cut(s) 174, 193
BsmAI GTCTC 3 cut(s) 39, 99, 391
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 183
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 4 cut(s) 53, 66, 115, 189
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 401
BspFNI CGCG 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 183
BssNI GRCGYC 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 80, 370
BstACI GRCGYC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 53, 277
BstDEI CTNAG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 3 cut(s) 39, 99, 391
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 191
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 2 cut(s) 129, 360
BstV2I GAAGAC 1 cut(s) 371
BsuRI GGCC 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 53, 277
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 240
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviJI RGCY 7 cut(s) 51, 120, 163, 177, 232, 325, 400
CviKI_1 RGCY 7 cut(s) 51, 120, 163, 177, 232, 325, 400
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 388
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DraIII CACNNNGTG 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 53
Eco72I CACGTG 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 99
FaiI YATR 5 cut(s) 306, 308, 343, 384, 403
FauI CCCGC 2 cut(s) 60, 122
Fnu4HI GCNGC 3 cut(s) 118, 189, 374
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 118, 189, 374
FspBI CTAG 1 cut(s) 215
GluI GCNGC 3 cut(s) 118, 189, 374
HaeIII GGCC 1 cut(s) 177
HapII CCGG 2 cut(s) 174, 193
HgaI GACGC 1 cut(s) 205
Hin1I GRCGYC 1 cut(s) 197
HinfI GANTC 2 cut(s) 23, 251
HpaII CCGG 2 cut(s) 174, 193
Hpy188I TCNGA 4 cut(s) 146, 159, 205, 391
Hpy188III TCNNGA 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 2 cut(s) 80, 370
HpyCH4IV ACGT 2 cut(s) 9, 270
HpyCH4V TGCA 1 cut(s) 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 388
HpySE526I ACGT 2 cut(s) 9, 270
Hsp92I GRCGYC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 187, 206, 298, 316
Lsp1109I GCAGC 2 cut(s) 129, 360
MaeI CTAG 1 cut(s) 215
MaeII ACGT 2 cut(s) 9, 270
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 3 cut(s) 133, 373, 376
MhlI GDGCHC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 9 cut(s) 100, 144, 176, 211, 230, 254, 273, 290, 356
MseI TTAA 2 cut(s) 62, 396
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 2 cut(s) 174, 193
MspR9I CCNGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 285
NciI CCSGG 1 cut(s) 193
NdeII GATC 1 cut(s) 183
NruI TCGCGA 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 2 cut(s) 23, 251
PkrI GCNGC 3 cut(s) 119, 190, 375
PmaCI CACGTG 1 cut(s) 10
PmlI CACGTG 1 cut(s) 10
Ppu21I YACGTR 1 cut(s) 10
PspCI CACGTG 1 cut(s) 10
RruI TCGCGA 1 cut(s) 267
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 2 cut(s) 62, 396
SatI GCNGC 3 cut(s) 118, 189, 374
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 53
SetI ASST 6 cut(s) 12, 122, 155, 234, 273, 402
SmiMI CAYNNNNRTG 1 cut(s) 381
SsiI CCGC 4 cut(s) 53, 66, 115, 189
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 80, 370
TaiI ACGT 2 cut(s) 12, 273
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 2 cut(s) 23, 251
Tru1I TTAA 2 cut(s) 62, 396
Tru9I TTAA 2 cut(s) 62, 396
TscAI CASTG 1 cut(s) 301
TseI GCWGC 2 cut(s) 117, 373
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 1 cut(s) 301
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.