RchiOBHm_Chr6g0244211

Src homology 3 domains

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
368631 .. 371504
2874 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 150 bp
ATGGTGATATATGAGGTTGAGAGGCAGAGACATCAACAGCTTGAGAAACTGTATAGGTCTACTCGTGCAGGAAAGGATTTTCATAAAGAAATTGCACATGCAGCTGAAGCATTGACAGCGATAGGACATAAGCATATTGAAGCAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.67

Weight (kDa)

8.19

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025101)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0244211
rosa_samantha Rh4CG287100
rosa_wichuraiana Rw6G001870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 2 cut(s) 40, 104
AluI AGCT 2 cut(s) 40, 104
Alw26I GTCTC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 16
BauI CACGAG 1 cut(s) 63
BbvI GCAGC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 22
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 134
BssSI CACGAG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 101, 107, 116
BstNSI RCATGY 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 113
BveI ACCTGC 1 cut(s) 134
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 40, 104
CviKI_1 RGCY 2 cut(s) 40, 104
Eco57I CTGAAG 1 cut(s) 126
FaeI CATG 1 cut(s) 101
FaiI YATR 7 cut(s) 10, 12, 54, 84, 99, 129, 135
FatI CATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 102
FspEI CC 6 cut(s) 7, 40, 54, 59, 108, 129
GluI GCNGC 1 cut(s) 102
Hin1II CATG 1 cut(s) 101
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 60
Hpy8I GTNNAC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 68, 95, 101
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 107, 116
Hsp92II CATG 1 cut(s) 101
LpnPI CCDG 2 cut(s) 54, 129
Lsp1109I GCAGC 1 cut(s) 113
MluCI AATT 1 cut(s) 90
MnlI CCTC 2 cut(s) 7, 15
MseI TTAA 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 101, 107, 116
NlaIII CATG 1 cut(s) 101
NspI RCATGY 1 cut(s) 101
PkrI GCNGC 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 148
SatI GCNGC 1 cut(s) 102
SetI ASST 5 cut(s) 18, 42, 59, 106, 148
SgeI CNNG 5 cut(s) 53, 75, 77, 81, 110
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 90
TaaI ACNGT 1 cut(s) 51
TasI AATT 1 cut(s) 90
Tru1I TTAA 1 cut(s) 148
Tru9I TTAA 1 cut(s) 148
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 71
XceI RCATGY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.