RchiOBHm_Chr6g0245591

Ribosomal protein S13

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
1370846 .. 1371073
228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGTCATATATTTCAGGAGCTAGATCAGTTGTAGATGAACAAGTAAGAATTGCCTCAACAAAAATTGATGGAATTAGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATTAATGGGATCATAAAGATAAAAGAGTTAACTAAGTATCAGATCGAACAAATTGAACAAATGATAGGTCAAGATCATGTTGCTCATTGGGAATTGAAGAGGGGATTCTCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.64

Weight (kDa)

9.82

Isoelectric Point (pI)

28.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 11 - 64 1.5e-08 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 131
AgsI TTSAA 2 cut(s) 170, 211
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwI GGATC 1 cut(s) 131
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AseI ATTAAT 1 cut(s) 117
BccI CCATC 1 cut(s) 62
BfaI CTAG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 106
Bsp143I GATC 4 cut(s) 23, 123, 156, 187
BspDI ATCGAT 1 cut(s) 106
BspHI TCATGA 1 cut(s) 224
BspPI GGATC 1 cut(s) 131
BssMI GATC 4 cut(s) 23, 123, 156, 187
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 147
BstKTI GATC 4 cut(s) 26, 126, 159, 190
BstMBI GATC 4 cut(s) 23, 123, 156, 187
Bsu15I ATCGAT 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 106
CciI TCATGA 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 106
CviAII CATG 2 cut(s) 191, 225
CviJI RGCY 2 cut(s) 20, 89
CviKI_1 RGCY 2 cut(s) 20, 89
DdeI CTNAG 1 cut(s) 147
DpnI GATC 4 cut(s) 25, 125, 158, 189
DpnII GATC 4 cut(s) 23, 123, 156, 187
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
FaeI CATG 2 cut(s) 194, 228
FaiI YATR 5 cut(s) 7, 9, 128, 192, 226
FatI CATG 2 cut(s) 190, 224
FspBI CTAG 1 cut(s) 21
Hin1II CATG 2 cut(s) 194, 228
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 219
HpaI GTTAAC 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 15, 185, 225
Hpy8I GTNNAC 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 194, 228
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 23, 123, 156, 187
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 1 cut(s) 80
MaeI CTAG 1 cut(s) 21
MalI GATC 4 cut(s) 25, 125, 158, 189
MboI GATC 4 cut(s) 23, 123, 156, 187
MboII GAAGA 1 cut(s) 223
MluCI AATT 5 cut(s) 48, 63, 72, 165, 206
MnlI CCTC 2 cut(s) 64, 207
MseI TTAA 2 cut(s) 117, 143
NdeII GATC 4 cut(s) 23, 123, 156, 187
NlaIII CATG 2 cut(s) 194, 228
PagI TCATGA 1 cut(s) 224
PfeI GAWTC 1 cut(s) 219
PshBI ATTAAT 1 cut(s) 117
SaqAI TTAA 2 cut(s) 117, 143
Sau3AI GATC 4 cut(s) 23, 123, 156, 187
SetI ASST 5 cut(s) 22, 82, 99, 115, 184
SgeI CNNG 6 cut(s) 27, 33, 53, 107, 197, 203
Sse9I AATT 5 cut(s) 48, 63, 72, 165, 206
SspMI CTAG 1 cut(s) 21
TaqI TCGA 2 cut(s) 106, 159
TasI AATT 5 cut(s) 48, 63, 72, 165, 206
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 2 cut(s) 117, 143
Tru9I TTAA 2 cut(s) 117, 143
TspDTI ATGAA 1 cut(s) 51
VspI ATTAAT 1 cut(s) 117
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.