RchiOBHm_Chr6g0245731
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
1506341 .. 1507382
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 450 bp
ATGAAAAGAGAGGCAGCTGCTAAGAAGATACAGAAGCACATACGTAGATATCGAGCCAGAACAAATTATAAAAAACTCCATCTCTCAGGGCTCGTCTTGCAAACAGGTTTAAGAGCAATGGCTGCTCGTAATCAATTCAGATTTAGGAAGCAAGCTAAAGCAGCAACCATTCTTCAGGCTGTGTGGCGATGTCATAAAGCTGCCTCATACTTTAAGAGGCTGAAGAAGGGTTCATTGGTCGCACAATGCCGAATGAGGGCAAAAATTGCAAGGAAGGAACTTAGGAAGCTCAAAATGGAAGCAAGGGAAACAGGTGCTCTTAAAGAAGCGAAAGACAAGTTAACAAAACAAGTGGAGGAACTAACTTGGCGTCTACAGTTGGAAAAACGTTTAAGGGTATTTTCTTTGTCTTGCAATGTGTGTGATTTCCACCTGTACCTTCACTGCTGA

Protein Analysis

149

Amino Acids

17.61

Weight (kDa)

10.95

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AccI GTMKAC 1 cut(s) 373
AclI AACGTT 1 cut(s) 388
AcuI CTGAAG 2 cut(s) 158, 242
AcyI GRCGYC 1 cut(s) 370
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 4 cut(s) 17, 155, 200, 289
AluI AGCT 4 cut(s) 17, 155, 200, 289
Alw21I GWGCWC 1 cut(s) 319
ApeKI GCWGC 5 cut(s) 14, 17, 122, 161, 200
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 5 cut(s) 4, 26, 109, 173, 187
BccI CCATC 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 5 cut(s) 15, 18, 123, 162, 201
BlsI GCNGC 5 cut(s) 16, 19, 124, 163, 202
BsaAI YACGTR 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 2 cut(s) 123, 421
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 2 cut(s) 123, 421
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 5 cut(s) 4, 26, 109, 173, 187
BsiHKAI GWGCWC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 93, 319
BspCNI CTCAG 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 123, 421
BssNI GRCGYC 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 370
BstAPI GCANNNNNTGC 2 cut(s) 122, 266
BstBAI YACGTR 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 21, 85, 281
BstMWI GCNNNNNNNGC 4 cut(s) 97, 122, 161, 266
BstSFI CTRYAG 1 cut(s) 374
BstSNI TACGTA 1 cut(s) 44
BstV1I GCAGC 5 cut(s) 4, 26, 109, 173, 187
BtgZI GCGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 153
CseI GACGC 1 cut(s) 359
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviJI RGCY 9 cut(s) 17, 56, 91, 122, 155, 179, 200, 220, 289
CviKI_1 RGCY 9 cut(s) 17, 56, 91, 122, 155, 179, 200, 220, 289
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 3 cut(s) 21, 85, 281
Eco105I TACGTA 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 158, 242
EcoRV GATATC 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 93
FaiI YATR 4 cut(s) 41, 69, 195, 208
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 5 cut(s) 15, 18, 123, 162, 201
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 15, 18, 123, 162, 201
GluI GCNGC 5 cut(s) 15, 18, 123, 162, 201
HgaI GACGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 370
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HpaI GTTAAC 1 cut(s) 342
Hpy166II GTNNAC 2 cut(s) 342, 374
Hpy188I TCNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 342, 374
HpyAV CCTTC 3 cut(s) 220, 268, 449
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 2 cut(s) 43, 388
HpyCH4V TGCA 3 cut(s) 100, 269, 414
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 122, 161, 266
HpyF3I CTNAG 3 cut(s) 21, 85, 281
HpySE526I ACGT 2 cut(s) 43, 388
Hsp92I GRCGYC 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 342
LpnPI CCDG 6 cut(s) 70, 72, 90, 161, 297, 446
Lsp1109I GCAGC 5 cut(s) 4, 26, 109, 173, 187
MaeII ACGT 2 cut(s) 43, 388
MboII GAAGA 3 cut(s) 37, 164, 235
MhlI GDGCHC 2 cut(s) 93, 319
MluCI AATT 3 cut(s) 64, 134, 264
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 5 cut(s) 4, 210, 214, 249, 349
MseI TTAA 5 cut(s) 110, 213, 321, 341, 392
MspA1I CMGCKG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 97, 122, 161, 266
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PkrI GCNGC 5 cut(s) 16, 19, 124, 163, 202
Ppu21I YACGTR 1 cut(s) 44
PsiI TTATAA 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
SaqAI TTAA 5 cut(s) 110, 213, 321, 341, 392
SatI GCNGC 5 cut(s) 15, 18, 123, 162, 201
SduI GDGCHC 2 cut(s) 93, 319
SfcI CTRYAG 1 cut(s) 374
SnaBI TACGTA 1 cut(s) 44
Sse9I AATT 3 cut(s) 64, 134, 264
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 2 cut(s) 46, 391
TaqI TCGA 1 cut(s) 52
TasI AATT 3 cut(s) 64, 134, 264
Tru1I TTAA 5 cut(s) 110, 213, 321, 341, 392
Tru9I TTAA 5 cut(s) 110, 213, 321, 341, 392
TscAI CASTG 1 cut(s) 449
TseI GCWGC 5 cut(s) 14, 17, 122, 161, 200
TspDTI ATGAA 2 cut(s) 17, 222
TspRI CASTG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.