Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2133930 .. 2137497

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCGCTGTCGTCGGAGGAGTCCATGAACCTCAAGGTTCCGAGAACAGACTCGAAGCTGACAACCTTGCTCGCTTCGCCGTCCAAGACCGTGACACCAATAAGACGGGGCATGCTCCAGGAGTGGTGACAGTTAGCTGTCTCTGTGCCGGTTTAAACGTGCATCTTCAAGCTCCAGTTATGCCTACATCTTCAGGGATTGAACTGGACCTATTATATCAATTCTATCCTGGTCCAAATCAAGTTCTAGTTCGAAATTTCAAGGATTCAGAGGAGGTATCGTGCATTTTGGTGAATGAAGTGCAGAAGGACATCAAGTACTTGAATGGAGGCCGAATGGTAGGAGGACACTTTCTGTGGCATTTAGTCCTGGGCTCTGCACTCGGGCCGCTCCTTTTCCGTCAGTGTTGCTTCGGTGACGGTCATCCTTCACCATGGGAGGTTGATCAAGGGATGGGGACACCTTTTCGACGCGGACCAGCTTGCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

163

Amino Acids

17.66

Weight (kDa)

5.81

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	490
AccBSI	CCGCTC	1 cut(s)	391
AccII	CGCG	1 cut(s)	474
AciI	CCGC	3 cut(s)	6, 389, 474
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	170, 203, 262, 325
AjnI	CCWGG	3 cut(s)	118, 229, 369
AluBI	AGCT	4 cut(s)	59, 138, 173, 482
AluI	AGCT	4 cut(s)	59, 138, 173, 482
Alw26I	GTCTC	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	3, 331, 386
ApoI	RAATTY	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	208, 233, 386, 476
AsuHPI	GGTGA	4 cut(s)	139, 304, 423, 428
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	3 cut(s)	208, 233, 476
BanII	GRGCYC	1 cut(s)	377
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	3 cut(s)	120, 231, 371
BclI	TGATCA	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	2 cut(s)	6, 389
BlsI	GCNGC	2 cut(s)	7, 390
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	3 cut(s)	120, 231, 371
Bme18I	GGWCC	3 cut(s)	208, 233, 476
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	4 cut(s)	208, 233, 386, 476
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	3 cut(s)	120, 231, 371
BmsI	GCATC	1 cut(s)	172
BpmI	CTGGAG	2 cut(s)	102, 159
Bpu14I	TTCGAA	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	370, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	176, 210
BseBI	CCWGG	3 cut(s)	120, 231, 371
BseDI	CCNNGG	2 cut(s)	370, 434
BseGI	GGATG	2 cut(s)	424, 459
BseNI	ACTGG	2 cut(s)	176, 210
BseRI	GAGGAG	2 cut(s)	33, 287
BsgI	GTGCAG	2 cut(s)	323, 363
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	3 cut(s)	5, 333, 388
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	5, 333, 388
BsoBI	CYCGRG	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	1 cut(s)	445
Bsp19I	CCATGG	1 cut(s)	434
BspACI	CCGC	3 cut(s)	6, 389, 474
BspANI	GGCC	3 cut(s)	5, 333, 388
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	176, 210
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	370, 434
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	3 cut(s)	120, 231, 371
Bst4CI	ACNGT	3 cut(s)	92, 133, 422
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	73, 114, 484
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	424, 459
BstFNI	CGCG	1 cut(s)	474
BstKTI	GATC	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	3 cut(s)	120, 231, 371
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	118, 229, 369
BstUI	CGCG	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	5, 333, 388
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	424, 459
BtsIMutI	CAGTG	1 cut(s)	410
Cac8I	GCNNGC	3 cut(s)	73, 114, 484
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	208, 233, 386, 476
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	3 cut(s)	26, 113, 435
CviJI	RGCY	8 cut(s)	5, 59, 138, 173, 333, 375, 388, 482
CviKI_1	RGCY	8 cut(s)	5, 59, 138, 173, 333, 375, 388, 482
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
DraI	TTTAAA	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	208, 233, 476
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	383
EcoRII	CCWGG	3 cut(s)	118, 229, 369
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	3 cut(s)	29, 116, 438
FaiI	YATR	6 cut(s)	27, 114, 182, 217, 436, 490
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	25, 112, 434
FbaI	TGATCA	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	6, 389
FokI	GGATG	2 cut(s)	411, 466
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	2 cut(s)	6, 389
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	2 cut(s)	6, 389
GsuI	CTGGAG	2 cut(s)	102, 159
HaeIII	GGCC	3 cut(s)	5, 333, 388
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	29, 116, 438
HinfI	GANTC	3 cut(s)	21, 51, 266
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	4 cut(s)	139, 304, 423, 428
Hpy188I	TCNGA	3 cut(s)	17, 43, 271
Hpy99I	CGWCG	2 cut(s)	17, 474
HpyAV	CCTTC	2 cut(s)	301, 438
HpyCH4III	ACNGT	3 cut(s)	92, 133, 422
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	163, 285, 304, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	29, 116, 438
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	1 cut(s)	445
LmnI	GCTCC	3 cut(s)	121, 178, 396
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	92, 127, 416
MalI	GATC	1 cut(s)	447
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	1 cut(s)	445
MboII	GAAGA	2 cut(s)	158, 183
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	221, 256
MlyI	GAGTC	2 cut(s)	30, 45
MnlI	CCTC	7 cut(s)	11, 42, 265, 268, 323, 338, 433
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	120, 231, 371
MssI	GTTTAAAC	1 cut(s)	156
MvaI	CCWGG	3 cut(s)	120, 231, 371
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	29, 116, 438
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	3 cut(s)	92, 127, 416
NspI	RCATGY	1 cut(s)	116
NspV	TTCGAA	1 cut(s)	253
PaeI	GCATGC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	7, 390
PleI	GAGTC	2 cut(s)	29, 45
PmeI	GTTTAAAC	1 cut(s)	156
PpsI	GAGTC	2 cut(s)	29, 45
PsiI	TTATAA	1 cut(s)	490
Psp6I	CCWGG	3 cut(s)	118, 229, 369
PspGI	CCWGG	3 cut(s)	118, 229, 369
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	208, 233, 386, 476
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	2 cut(s)	6, 389
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	4 cut(s)	208, 233, 386, 476
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	2 cut(s)	30, 45
ScrFI	CCNGG	3 cut(s)	120, 231, 371
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	3 cut(s)	208, 233, 476
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	221, 256
SsiI	CCGC	3 cut(s)	6, 389, 474
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	118, 229, 369
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	92, 133, 422
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	54, 253, 469
TasI	AATT	2 cut(s)	221, 256
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	8, 391
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	3 cut(s)	92, 127, 416
Tsp45I	GTSAC	3 cut(s)	92, 127, 416
TspDTI	ATGAA	2 cut(s)	42, 312
TspGWI	ACGGA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	208, 233, 476
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.