RchiOBHm_Chr6g0247371

Basic form of pathogenesis-related protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
3268910 .. 3269131
222 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGGAGCATTCTAGAGAACCGTATGGCGAAAACTTGGCTGAAGGCTATGATGAAATGACAGGTGCGCAAGCAGTGAAGCTTTGGCTGACCGAGAAGCCTAACTATGATTACGCGCCAATAATAACTGTATTAGCTAGAGATGAATGTTTGCATTATACTCAAGTGGTTTGGCGCAATTTGGTTCATGTTGGTTGTGCTAGGGCCATGTGTAAAAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

73

Amino Acids

8.36

Weight (kDa)

5.47

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 13 - 73 4.7e-10 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 66
AccII CGCG 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 60
AluBI AGCT 2 cut(s) 79, 134
AluI AGCT 2 cut(s) 79, 134
AoxI GGCC 1 cut(s) 201
AspLEI GCGC 3 cut(s) 67, 115, 174
AspS9I GGNCC 1 cut(s) 201
BfaI CTAG 3 cut(s) 12, 135, 198
BmgT120I GGNCC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 144
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 7
BsnI GGCC 1 cut(s) 203
BspANI GGCC 1 cut(s) 203
BspFNI CGCG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 21, 127
BstC8I GCNNGC 1 cut(s) 69
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 3 cut(s) 67, 115, 174
BstUI CGCG 1 cut(s) 113
BsuRI GGCC 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 3 cut(s) 67, 115, 174
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 2 cut(s) 185, 205
CviJI RGCY 7 cut(s) 38, 45, 79, 85, 97, 134, 203
CviKI_1 RGCY 7 cut(s) 38, 45, 79, 85, 97, 134, 203
Eco57I CTGAAG 1 cut(s) 60
FaeI CATG 2 cut(s) 188, 208
FaiI YATR 6 cut(s) 24, 48, 105, 156, 186, 206
FatI CATG 2 cut(s) 184, 204
FspBI CTAG 3 cut(s) 12, 135, 198
FspI TGCGCA 1 cut(s) 66
GlaI GCGC 3 cut(s) 66, 114, 173
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 3 cut(s) 67, 115, 174
Hin1II CATG 2 cut(s) 188, 208
Hin6I GCGC 3 cut(s) 65, 113, 172
HinP1I GCGC 3 cut(s) 65, 113, 172
HindIII AAGCTT 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 21, 127
HpyCH4V TGCA 1 cut(s) 151
Hsp92II CATG 2 cut(s) 188, 208
HspAI GCGC 3 cut(s) 65, 113, 172
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 45
MaeI CTAG 3 cut(s) 12, 135, 198
MluCI AATT 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 7
MvnI CGCG 1 cut(s) 113
NlaIII CATG 2 cut(s) 188, 208
NsbI TGCGCA 1 cut(s) 66
PctI GAATGC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 201
Sau96I GGNCC 1 cut(s) 201
SetI ASST 3 cut(s) 64, 81, 136
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 12, 135, 198
TaaI ACNGT 2 cut(s) 21, 127
TaqII GACCGA 1 cut(s) 104
TasI AATT 1 cut(s) 175
TscAI CASTG 1 cut(s) 78
TspDTI ATGAA 3 cut(s) 66, 156, 173
TspRI CASTG 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 11
XspI CTAG 3 cut(s) 12, 135, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.