RchiOBHm_Chr6g0249031

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
4890609 .. 4891445
837 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGTATTCGGCACAGGGATATGTGCTTGGCAACCCAGTAACAGATGAAGAAAGAGACCAGAATTCCCAAGTACTGTTTGCTTACCTAAAAGCTCTTATATCACATGAACTATACCAGTCAATCAAAAGTAATTGCAGAGGGGAGTATGTAAATGTGGATCCAAACAACGCATTATGTGTTTACGATCTTGAACTTGTCAACGAGTGCATCCAAGGCATAAACCTTCCACATATATTGGAACCTGAATGTACTATCAAATCTCCAAAACCGATAGGGAGAGAGTGGGATCCTCGCGATTTCAGTAATAAGGAGCTCGTACATTCCCTTCTTCAGTTTCCTCAAGTTTCTAGGCCATGGTGTCGGGTACATATCTCTCTCTTCATTTTGGCGCTCAGGCCCGGTTTGTTTGGGATTGCTTCTGTAAATATATTTTTGTTTTGTTTTGCTAGAAGCACAAGGAAAATTCTAAAAGGAAAATATCCATTTACTCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

165

Amino Acids

18.92

Weight (kDa)

7.61

Isoelectric Point (pI)

46.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 5 - 88 1.3e-11 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 294
AclWI GGATC 4 cut(s) 152, 165, 281, 294
AcsI RAATTY 3 cut(s) 61, 462, 492
AcuI CTGAAG 1 cut(s) 314
AfaI GTAC 4 cut(s) 72, 250, 318, 366
AgsI TTSAA 1 cut(s) 191
AluBI AGCT 2 cut(s) 92, 313
AluI AGCT 2 cut(s) 92, 313
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 4 cut(s) 152, 165, 281, 294
AoxI GGCC 2 cut(s) 350, 395
ApoI RAATTY 3 cut(s) 61, 462, 492
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 399
BamHI GGATCC 2 cut(s) 157, 286
BanII GRGCYC 1 cut(s) 315
BarI GAAGNNNNNNTAC 2 cut(s) 309, 341
Bbv12I GWGCWC 1 cut(s) 315
BcnI CCSGG 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 348, 447
BfoI RGCGCY 1 cut(s) 392
BmcAI AGTACT 1 cut(s) 72
Bme1390I CCNGG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 3 cut(s) 159, 240, 288
BmrFI CCNGG 1 cut(s) 399
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 324
BpuMI CCSGG 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 211, 353
Bse1I ACTGG 2 cut(s) 35, 115
BseDI CCNNGG 2 cut(s) 211, 353
BseGI GGATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 406
BseNI ACTGG 2 cut(s) 35, 115
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 2 cut(s) 352, 397
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 2 cut(s) 352, 397
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 3 cut(s) 157, 184, 286
Bsp19I CCATGG 1 cut(s) 353
Bsp68I TCGCGA 1 cut(s) 294
BspANI GGCC 2 cut(s) 352, 397
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 159, 240, 288
BspPI GGATC 4 cut(s) 152, 165, 281, 294
BspTNI GGTCTC 1 cut(s) 48
BsrI ACTGG 2 cut(s) 35, 115
BssECI CCNNGG 2 cut(s) 211, 353
BssMI GATC 3 cut(s) 157, 184, 286
BssT1I CCWWGG 2 cut(s) 211, 353
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 392
BstDSI CCRYGG 1 cut(s) 353
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 160, 187, 289
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 157, 184, 286
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 397
BstUI CGCG 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 157, 286
BstYI RGATCY 2 cut(s) 157, 286
BsuRI GGCC 2 cut(s) 352, 397
BtgI CCRYGG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 207
BtuMI TCGCGA 1 cut(s) 294
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 4 cut(s) 71, 249, 317, 365
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 2 cut(s) 104, 354
CviJI RGCY 4 cut(s) 92, 313, 352, 397
CviKI_1 RGCY 4 cut(s) 92, 313, 352, 397
CviQI GTAC 4 cut(s) 71, 249, 317, 365
DdeI CTNAG 1 cut(s) 392
DpnI GATC 3 cut(s) 159, 186, 288
DpnII GATC 3 cut(s) 157, 184, 286
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 211, 353
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 211, 353
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 211, 353
FaeI CATG 2 cut(s) 107, 357
FatI CATG 2 cut(s) 103, 353
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 2 cut(s) 348, 447
GlaI GCGC 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 2 cut(s) 352, 397
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 391
Hin1II CATG 2 cut(s) 107, 357
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HpaII CCGG 1 cut(s) 399
Hpy166II GTNNAC 2 cut(s) 181, 199
Hpy188III TCNNGA 2 cut(s) 188, 293
Hpy8I GTNNAC 2 cut(s) 181, 199
HpyAV CCTTC 2 cut(s) 233, 335
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 135, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 392
Hsp92II CATG 2 cut(s) 107, 357
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 3 cut(s) 157, 184, 286
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 6 cut(s) 48, 71, 128, 255, 379, 412
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 348, 447
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 159, 186, 288
MboI GATC 3 cut(s) 157, 184, 286
MboII GAAGA 3 cut(s) 59, 320, 370
MflI RGATCY 2 cut(s) 157, 286
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 61, 130, 462, 492
MnlI CCTC 3 cut(s) 131, 300, 348
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 399
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 213
NciI CCSGG 1 cut(s) 399
NcoI CCATGG 1 cut(s) 353
NdeII GATC 3 cut(s) 157, 184, 286
NlaIII CATG 2 cut(s) 107, 357
NlaIV GGNNCC 3 cut(s) 159, 240, 288
NruI TCGCGA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 315
PspN4I GGNNCC 3 cut(s) 159, 240, 288
PspPI GGNCC 1 cut(s) 396
PsuI RGATCY 2 cut(s) 157, 286
RruI TCGCGA 1 cut(s) 294
RsaI GTAC 4 cut(s) 72, 250, 318, 366
RsaNI GTAC 4 cut(s) 71, 249, 317, 365
SacI GAGCTC 1 cut(s) 315
Sau3AI GATC 3 cut(s) 157, 184, 286
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 1 cut(s) 315
SetI ASST 5 cut(s) 87, 94, 225, 244, 315
SfaNI GCATC 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 4 cut(s) 61, 130, 462, 492
SspMI CTAG 2 cut(s) 348, 447
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 397
StyI CCWWGG 2 cut(s) 211, 353
TaaI ACNGT 1 cut(s) 75
TasI AATT 4 cut(s) 61, 130, 462, 492
TatI WGTACW 2 cut(s) 70, 248
TspDTI ATGAA 3 cut(s) 60, 120, 370
XapI RAATTY 3 cut(s) 61, 462, 492
XspI CTAG 2 cut(s) 348, 447
ZrmI AGTACT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.