RchiOBHm_Chr6g0249241

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
5136302 .. 5136862
561 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 138 bp
ATGGAAGTGATTGTTTGTAAGAAGGGGCAGGAGGTTCTGGTTCAAGGTGGAGTAATTGAAAATCTGGCAAAGCACTTGATTGAACAATATGGGATTCCAAAGAGATACATTGAGGTTCTTGACAAAACCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

45

Amino Acids

5.2

Weight (kDa)

8.93

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 44, 59, 83
AjnI CCWGG 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 130
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 128
FaiI YATR 1 cut(s) 90
HinfI GANTC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 14, 23, 50, 115
MluCI AATT 1 cut(s) 54
MnlI CCTC 2 cut(s) 25, 106
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
PfeI GAWTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 130
SetI ASST 3 cut(s) 36, 49, 117
SgeI CNNG 6 cut(s) 41, 50, 56, 77, 88, 131
Sse9I AATT 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 128
TasI AATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.