Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5361185 .. 5366310

Gene Structure 5126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCGGCCATTGCTCCACTCTCTTCCTCCTTGTCGAAATCGAAACCCTCGGCTTTCCCTTCTTCTTCTTCTTCTTCAACAAATGCCATTTCCAGATGTAGTTTCCGCCCCTTCCCGCCCGTTACCCACCGACCTCTGCACATTTCTAGTTCCCTCCCTCCTAAAGCCGCGACTGCCCCTTCGGACTCACAAAGTTTCACTTCCCGATTTGCCCCTGACGAGCCCAGAAAAGGCTCCGATGTCCTCGTGGAGGCCCTCGAACGCCAAGGCGTCACCGACGTATTCGCCTACCCCGGAGGCGCATCCATGGAGATCCATCAGGCCCTCACGCGCTCCTCCACCATCCGCAATGTTCTCCCCCGCCACGAGCAAGGTGGCATCTTCGCTGCTGAGGGCTACGCGCGCGCCTCGGGCCTTCCCGGCGTCTGTATTGCAACCTCGGGCCCTGGCGCTACCAACTTAGTCAGTGGCCTTGCTGACGCACTCCTTGACAGCGTTCCGGTCGTCGCTATCACCGGACAAGTCCCCCGCCGGATGATCGGTACCGACGCTTTTCAAGAGACCCCAATTGTAGAGGTTCTGACGAGGCTGAAGCCATTTCGATCAGCAGCAGAAAAAGCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003984 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006573 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009099 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016744 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

208

Amino Acids

21.73

Weight (kDa)

9.38

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	77 - 187	1.9e-37	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AccII	CGCG	5 cut(s)	170, 331, 401, 403, 405
AciI	CCGC	7 cut(s)	5, 106, 116, 168, 346, 361, 529
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	611
AcyI	GRCGYC	2 cut(s)	270, 423
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	230, 250
AgsI	TTSAA	2 cut(s)	78, 557
AjnI	CCWGG	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	2 cut(s)	409, 439
AoxI	GGCC	6 cut(s)	6, 252, 321, 412, 442, 469
ApaI	GGGCCC	1 cut(s)	446
ApeKI	GCWGC	2 cut(s)	386, 608
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
Asp718I	GGTACC	1 cut(s)	542
AspLEI	GCGC	6 cut(s)	302, 333, 403, 405, 407, 452
AspS9I	GGNCC	5 cut(s)	253, 322, 412, 442, 443
AsuC2I	CCSGG	2 cut(s)	294, 420
AsuHPI	GGTGA	2 cut(s)	265, 505
AvaI	CYCGRG	2 cut(s)	409, 439
BaeGI	GKGCMC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	2 cut(s)	225, 446
BauI	CACGAG	2 cut(s)	245, 365
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	373, 620
BccI	CCATC	2 cut(s)	324, 350
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	2 cut(s)	294, 420
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	453
BglI	GCCNNNNNGGC	1 cut(s)	420
BisI	GCNGC	4 cut(s)	6, 168, 387, 609
BlsI	GCNGC	4 cut(s)	7, 169, 388, 610
Bme1390I	CCNGG	3 cut(s)	294, 420, 447
BmeT110I	CYCGRG	2 cut(s)	409, 439
BmgT120I	GGNCC	5 cut(s)	253, 322, 412, 442, 443
BmiI	GGNNCC	3 cut(s)	235, 444, 544
BmrFI	CCNGG	3 cut(s)	294, 420, 447
BmsI	GCATC	2 cut(s)	311, 387
Bpu10I	CCTNAGC	1 cut(s)	390
BpuMI	CCSGG	2 cut(s)	294, 420
BsaHI	GRCGYC	2 cut(s)	270, 423
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	7 cut(s)	48, 265, 292, 306, 408, 438, 445
BsaWI	WCCGGW	2 cut(s)	499, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 250
Bse3DI	GCAATG	2 cut(s)	9, 355
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	7 cut(s)	48, 265, 292, 306, 408, 438, 445
BseGI	GGATG	3 cut(s)	302, 342, 540
BseLI	CCNNNNNNNGG	2 cut(s)	230, 250
BseMI	GCAATG	2 cut(s)	9, 355
BseMII	CTCAG	1 cut(s)	381
BsePI	GCGCGC	2 cut(s)	401, 403
BseRI	GAGGAG	1 cut(s)	325
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	373, 620
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	5 cut(s)	170, 331, 401, 403, 405
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	6 cut(s)	8, 254, 323, 414, 444, 471
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	1 cut(s)	504
BsiHKCI	CYCGRG	2 cut(s)	409, 439
BsiSI	CCGG	5 cut(s)	294, 420, 500, 516, 532
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	230, 250
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	6 cut(s)	8, 254, 323, 414, 444, 471
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	2 cut(s)	409, 439
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	225, 446
Bsp143I	GATC	3 cut(s)	312, 537, 602
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	7 cut(s)	5, 106, 116, 168, 346, 361, 529
BspANI	GGCC	6 cut(s)	8, 254, 323, 414, 444, 471
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	5 cut(s)	170, 331, 401, 403, 405
BspLI	GGNNCC	3 cut(s)	235, 444, 544
BspPI	GGATC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	542
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	9, 355
BssECI	CCNNGG	7 cut(s)	48, 265, 292, 306, 408, 438, 445
BssHII	GCGCGC	2 cut(s)	401, 403
BssMI	GATC	3 cut(s)	312, 537, 602
BssNI	GRCGYC	2 cut(s)	270, 423
BssSI	CACGAG	2 cut(s)	245, 365
BssT1I	CCWWGG	2 cut(s)	265, 306
Bst2BI	CACGAG	2 cut(s)	245, 365
Bst2UI	CCWGG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	2 cut(s)	270, 423
BstC8I	GCNNGC	2 cut(s)	403, 405
BstDEI	CTNAG	2 cut(s)	390, 460
BstDSI	CCRYGG	1 cut(s)	306
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	302, 342, 540
BstFNI	CGCG	5 cut(s)	170, 331, 401, 403, 405
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	6 cut(s)	302, 333, 403, 405, 407, 452
BstKTI	GATC	3 cut(s)	315, 540, 605
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	3 cut(s)	312, 537, 602
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 173, 402, 411, 420, 617
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	3 cut(s)	292, 418, 445
BstSLI	GKGCMC	1 cut(s)	446
BstUI	CGCG	5 cut(s)	170, 331, 401, 403, 405
BstV1I	GCAGC	2 cut(s)	373, 620
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	6 cut(s)	8, 254, 323, 414, 444, 471
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	302, 342, 540
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	2 cut(s)	403, 405
CfoI	GCGC	6 cut(s)	302, 333, 403, 405, 407, 452
Cfr13I	GGNCC	5 cut(s)	253, 322, 412, 442, 443
CseI	GACGC	4 cut(s)	259, 412, 488, 557
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	390, 460
DpnI	GATC	3 cut(s)	314, 539, 604
DpnII	GATC	3 cut(s)	312, 537, 602
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	265, 306
Eco24I	GRGCYC	2 cut(s)	225, 446
Eco31I	GGTCTC	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	611
Eco88I	CYCGRG	2 cut(s)	409, 439
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	3 cut(s)	253, 322, 443
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	265, 306
EcoT38I	GRGCYC	2 cut(s)	225, 446
ErhI	CCWWGG	2 cut(s)	265, 306
FaeI	CATG	1 cut(s)	310
FaiI	YATR	1 cut(s)	308
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	1 cut(s)	306
FauI	CCCGC	3 cut(s)	123, 368, 536
Fnu4HI	GCNGC	4 cut(s)	6, 168, 387, 609
FokI	GGATG	3 cut(s)	289, 329, 547
FriOI	GRGCYC	2 cut(s)	225, 446
Fsp4HI	GCNGC	4 cut(s)	6, 168, 387, 609
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	6 cut(s)	301, 332, 402, 404, 406, 451
GluI	GCNGC	4 cut(s)	6, 168, 387, 609
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	6 cut(s)	8, 254, 323, 414, 444, 471
HapII	CCGG	5 cut(s)	294, 420, 500, 516, 532
HgaI	GACGC	4 cut(s)	259, 412, 488, 557
HhaI	GCGC	6 cut(s)	302, 333, 403, 405, 407, 452
Hin1I	GRCGYC	2 cut(s)	270, 423
Hin1II	CATG	1 cut(s)	310
Hin6I	GCGC	6 cut(s)	300, 331, 401, 403, 405, 450
HinP1I	GCGC	6 cut(s)	300, 331, 401, 403, 405, 450
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	5 cut(s)	294, 420, 500, 516, 532
HphI	GGTGA	2 cut(s)	265, 505
Hpy188I	TCNGA	4 cut(s)	184, 238, 582, 626
Hpy188III	TCNNGA	3 cut(s)	93, 204, 557
Hpy99I	CGWCG	3 cut(s)	281, 509, 551
HpyAV	CCTTC	4 cut(s)	69, 121, 189, 425
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	139, 434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 173, 402, 411, 420, 617
HpyF3I	CTNAG	2 cut(s)	390, 460
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	2 cut(s)	270, 423
Hsp92II	CATG	1 cut(s)	310
HspAI	GCGC	6 cut(s)	300, 331, 401, 403, 405, 450
KpnI	GGTACC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	312, 537, 602
LmnI	GCTCC	3 cut(s)	19, 239, 338
Lsp1109I	GCAGC	2 cut(s)	373, 620
LweI	GCATC	2 cut(s)	311, 387
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	121, 271
MalI	GATC	3 cut(s)	314, 539, 604
MauBI	CGCGCGCG	1 cut(s)	401
MboI	GATC	3 cut(s)	312, 537, 602
MboII	GAAGA	7 cut(s)	15, 54, 57, 60, 63, 66, 373
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	225, 446
MluCI	AATT	1 cut(s)	567
MlyI	GAGTC	1 cut(s)	179
MspI	CCGG	5 cut(s)	294, 420, 500, 516, 532
MspR9I	CCNGG	3 cut(s)	294, 420, 447
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	5 cut(s)	170, 331, 401, 403, 405
MwoI	GCNNNNNNNGC	6 cut(s)	11, 173, 402, 411, 420, 617
NciI	CCSGG	2 cut(s)	294, 420
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	3 cut(s)	312, 537, 602
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	3 cut(s)	235, 444, 544
NmeAIII	GCCGAG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	271
PauI	GCGCGC	2 cut(s)	401, 403
PkrI	GCNGC	4 cut(s)	7, 169, 388, 610
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	235, 444, 544
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	5 cut(s)	253, 322, 412, 442, 443
PsuI	RGATCY	1 cut(s)	312
PteI	GCGCGC	2 cut(s)	401, 403
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
SatI	GCNGC	4 cut(s)	6, 168, 387, 609
Sau3AI	GATC	3 cut(s)	312, 537, 602
Sau96I	GGNCC	5 cut(s)	253, 322, 412, 442, 443
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	294, 420, 447
SduI	GDGCHC	2 cut(s)	225, 446
SetI	ASST	5 cut(s)	136, 282, 376, 440, 579
SfaNI	GCATC	2 cut(s)	311, 387
Sse9I	AATT	1 cut(s)	567
SsiI	CCGC	7 cut(s)	5, 106, 116, 168, 346, 361, 529
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	292, 418, 445
StyI	CCWWGG	2 cut(s)	265, 306
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	4 cut(s)	35, 41, 258, 601
TasI	AATT	1 cut(s)	567
TauI	GCSGC	2 cut(s)	8, 170
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	386, 608
Tsp45I	GTSAC	1 cut(s)	271
TspRI	CASTG	1 cut(s)	472
XagI	CCTNNNNNAGG	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.