RchiOBHm_Chr6g0249791

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Reverse (-)
5637374 .. 5638061
688 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 168 bp
ATGTTCAAGAAGGGAGTGGAAGCTCGGTCGCACCAGAGGCTGTCAGGGGCTGACAGGAAGAAGCTCAAGAGGACCGTCAAGGAAAGATTTCCCAGAGCTTCCGACACCGATGTTGATGCTTTACTCCCTCCCAAGGTGGAGATAAAGGTTTCAAAGTATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.35

Weight (kDa)

10.34

Isoelectric Point (pI)

13.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pre-PUA PF17832 2 - 54 3.8e-09 Pre-PUA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 2 cut(s) 7, 153
AluBI AGCT 3 cut(s) 23, 64, 98
AluI AGCT 3 cut(s) 23, 64, 98
AlwNI CAGNNNCTG 2 cut(s) 40, 50
Asp700I GAANNNNTTC 1 cut(s) 87
AspS9I GGNCC 1 cut(s) 72
AvaII GGWCC 1 cut(s) 72
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmsI GCATC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 37
CaiI CAGNNNCTG 2 cut(s) 40, 50
Cfr13I GGNCC 1 cut(s) 72
CviJI RGCY 5 cut(s) 23, 40, 50, 64, 98
CviKI_1 RGCY 5 cut(s) 23, 40, 50, 64, 98
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 7, 67
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 30, 40, 47, 106
LweI GCATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 70
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 3 cut(s) 30, 63, 138
MroXI GAANNNNTTC 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 72
PstNI CAGNNNCTG 2 cut(s) 40, 50
Sau96I GGNCC 1 cut(s) 72
SetI ASST 5 cut(s) 25, 66, 100, 138, 150
SfaNI GCATC 1 cut(s) 106
SgeI CNNG 9 cut(s) 19, 36, 46, 57, 67, 79, 91, 105, 145
SinI GGWCC 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 163
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 76
TaqII GACCGA 1 cut(s) 15
TasI AATT 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.