RchiOBHm_Chr6g0252441

Lignin degradation and detoxification of lignin-derived products

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
N/A
Physical Location & Seq
Forward (+)
7598001 .. 7599205
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGATGCAGGAACATAAGTGGGGTTTACACAACGGATTTCCAGACCAACCGCCTTCTTATTATAACTTCACAGAGGAAACTTTCGTGGATAATATTGTGTTCACTGTCCAAGGGACAAAGGTGAAGTTGTTGAATTATAACGGCTCTGTTAATCATCCAATGCATATGCATGGATATAGCTTCTACGTGGTTGGATCTGGTTATGGAAATTATGACGATGAGGATGATCCAAAGGGTTTAATTTTGTTGATCCTCCTAAAGGTGTGGTTTTGGCACTGTCATTTTGATAGACACTTGAGTTGGGGTATGAACACTGCTTTCATTGTCAAGAATGGTGGTACTTCTGAGACTAACATTCGTCGACCCCAGCTTACATGCCTCCATGTGAGCCTCACTTGGATTCTCGTATCAAAAACAGTTACGAGAATATTCTATAAAAAAACAGAGCAACTATTATTTGTGTGTGTGTATATAAATTCAAGGAGCCTTCGCTGTTCAGCACTTCAGTGTGTGCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

20.06

Weight (kDa)

8.26

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 44 - 77 4.2e-08 Multicopper oxidase
Cu-oxidase_2 PF07731 88 - 112 6.4e-06 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 63, 138
AccI GTMKAC 1 cut(s) 361
AciI CCGC 1 cut(s) 50
AclWI GGATC 3 cut(s) 202, 221, 244
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 133, 480
AleI CACNNNNGTG 1 cut(s) 505
AluBI AGCT 2 cut(s) 180, 370
AluI AGCT 2 cut(s) 180, 370
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 3 cut(s) 202, 221, 244
ApoI RAATTY 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 133
BceAI ACGGC 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 154, 229
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 336
BseYI CCCAGC 1 cut(s) 366
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 127
Bsp143I GATC 3 cut(s) 194, 226, 249
BspACI CCGC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 485
BspPI GGATC 3 cut(s) 202, 221, 244
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 3 cut(s) 194, 226, 249
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 106, 278, 418
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 345
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 154, 229
BstKTI GATC 3 cut(s) 197, 229, 252
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 194, 226, 249
BstNSI RCATGY 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BtsCI GGATG 2 cut(s) 154, 229
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 4 cut(s) 102, 274, 312, 512
Csp6I GTAC 1 cut(s) 339
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 3 cut(s) 170, 375, 383
CviJI RGCY 5 cut(s) 144, 180, 370, 390, 486
CviKI_1 RGCY 5 cut(s) 144, 180, 370, 390, 486
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 345
DpnI GATC 3 cut(s) 196, 228, 251
DpnII GATC 3 cut(s) 194, 226, 249
Eco130I CCWWGG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 488
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 2 cut(s) 165, 171
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 3 cut(s) 173, 378, 386
FaqI GGGAC 1 cut(s) 127
FatI CATG 3 cut(s) 169, 374, 382
FauNDI CATATG 1 cut(s) 165
FblI GTMKAC 1 cut(s) 361
FokI GGATG 2 cut(s) 141, 236
GsaI CCCAGC 1 cut(s) 370
Hin1II CATG 3 cut(s) 173, 378, 386
HincII GTYRAC 1 cut(s) 362
HindII GTYRAC 1 cut(s) 362
HinfI GANTC 1 cut(s) 400
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 26, 102, 362
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 41, 328
Hpy8I GTNNAC 3 cut(s) 26, 102, 362
Hpy99I CGWCG 1 cut(s) 363
HpyAV CCTTC 2 cut(s) 63, 497
HpyCH4III ACNGT 3 cut(s) 106, 278, 418
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 7, 163, 169
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 3 cut(s) 173, 378, 386
Kzo9I GATC 3 cut(s) 194, 226, 249
LmnI GCTCC 1 cut(s) 483
LpnPI CCDG 3 cut(s) 54, 183, 380
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 196, 228, 251
MboI GATC 3 cut(s) 194, 226, 249
MflI RGATCY 1 cut(s) 194
MluCI AATT 4 cut(s) 133, 208, 240, 475
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 5 cut(s) 67, 214, 263, 389, 401
Mph1103I ATGCAT 2 cut(s) 165, 171
MseI TTAA 2 cut(s) 150, 239
MslI CAYNNNNRTG 2 cut(s) 168, 505
NdeI CATATG 1 cut(s) 165
NdeII GATC 3 cut(s) 194, 226, 249
NlaIII CATG 3 cut(s) 173, 378, 386
NlaIV GGNNCC 1 cut(s) 485
NsiI ATGCAT 2 cut(s) 165, 171
NspI RCATGY 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 505
PfeI GAWTC 1 cut(s) 400
Ppu21I YACGTR 1 cut(s) 187
PsiI TTATAA 2 cut(s) 63, 138
PspFI CCCAGC 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 485
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 2 cut(s) 168, 505
SalI GTCGAC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 150, 239
Sau3AI GATC 3 cut(s) 194, 226, 249
SetI ASST 5 cut(s) 123, 182, 189, 264, 372
SmiMI CAYNNNNRTG 2 cut(s) 168, 505
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 4 cut(s) 133, 208, 240, 475
SsiI CCGC 1 cut(s) 50
SspI AATATT 2 cut(s) 94, 429
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 106, 278, 418
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 361
TasI AATT 4 cut(s) 133, 208, 240, 475
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 2 cut(s) 150, 239
Tru9I TTAA 2 cut(s) 150, 239
TscAI CASTG 4 cut(s) 109, 281, 319, 512
TspDTI ATGAA 2 cut(s) 310, 323
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 4 cut(s) 109, 281, 319, 512
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 361
Zsp2I ATGCAT 2 cut(s) 165, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.